Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   GB851_RS06315 Genome accession   NZ_CP045141
Coordinates   1229123..1231165 (-) Length   680 a.a.
NCBI ID   WP_003789825.1    Uniprot ID   -
Organism   Kingella kingae strain F41215CHC     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1224123..1236165
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GB851_RS06295 (GB851_06460) dapC 1225222..1226400 (+) 1179 WP_003789831.1 succinyldiaminopimelate transaminase -
  GB851_RS06300 (GB851_06465) - 1226687..1227517 (+) 831 WP_206520648.1 DDE-type integrase/transposase/recombinase -
  GB851_RS10825 - 1227547..1227750 (+) 204 WP_228368952.1 hypothetical protein -
  GB851_RS06305 (GB851_06470) - 1227861..1228298 (+) 438 WP_164538204.1 DMP19 family protein -
  GB851_RS06310 (GB851_06475) rdgB 1228350..1228946 (+) 597 WP_003789826.1 RdgB/HAM1 family non-canonical purine NTP pyrophosphatase -
  GB851_RS06315 (GB851_06480) recG 1229123..1231165 (-) 2043 WP_003789825.1 ATP-dependent DNA helicase RecG Machinery gene
  GB851_RS06320 (GB851_06485) ppk2 1231271..1232188 (-) 918 WP_003789824.1 polyphosphate kinase 2 -
  GB851_RS06325 (GB851_06490) rfbB 1232451..1233464 (-) 1014 WP_051291726.1 dTDP-glucose 4,6-dehydratase -
  GB851_RS06330 (GB851_06495) - 1233458..1234030 (-) 573 WP_038306735.1 aminodeoxychorismate/anthranilate synthase component II -

Sequence

Protein


Download         Length: 680 a.a.        Molecular weight: 75255.12 Da        Isoelectric Point: 8.1169

>NTDB_id=343708 GB851_RS06315 WP_003789825.1 1229123..1231165(-) (recG) [Kingella kingae strain F41215CHC]
MQADIRQKLKLTDNAATKLAKLHLHTAWDLALHLPLRYEDETQVVPIAAAPIGESCQVEGVVLHQEVQFKPRKQLIAQIQ
DESGSVLNLRFIHFYPNHQKQLAQGQTVRALGEIKRGYYGDEMIHPKIKSPEKSDLAQSLTPIYPTTNGLNQPTLRKVVQ
TALETVDLSEILPDNYLKKYQLIPLAQSLRTLHNPPPDWSLSMLTNGALPEWRRLKFDELLAQQLSMRLARQRRRAGNAR
ALVSTGKLSEKLLSYLPFDLTNAQKKVCAEIREDLAKPVPMHRLLQGDVGSGKTIVAALSALVALESDGVQVAIMAPTEI
LAEQHFIKFKQWFEPLGISVAWLSGSLKKKEKDQAKAALADGRIRVAVGTHALFQDDVLFHDLALVIVDEQHRFGVAQRL
ALKNKGSDVHQLMMSATPIPRTLAMSFFADLDVSSIDELPPNRTPIKTKLVNNLRRSEVEGFVLNTCQKGQQAYWVCPLI
EESEVLQLQTATDTLAELQAALPQLKIGLVHGRMKAAEKAAVMAEFISGSLNVLVATTVIEVGVDVPNASLMVIEHAERM
GLAQLHQLRGRVGRGAAASTCVLLFAEPLGQISKARLKVIYENTDGFEIARQDLEIRGPGEFLGARQSGAPMLRFADLQE
DLLLLEAAREVAADLVAHRPDVVAKHLERWLGSREGFLAA

Nucleotide


Download         Length: 2043 bp        

>NTDB_id=343708 GB851_RS06315 WP_003789825.1 1229123..1231165(-) (recG) [Kingella kingae strain F41215CHC]
ATGCAAGCCGACATCCGCCAAAAACTCAAATTAACCGACAACGCCGCCACCAAGCTCGCCAAACTGCATTTGCATACCGC
GTGGGATTTGGCGTTGCATTTGCCCTTGCGCTACGAAGACGAAACCCAAGTTGTGCCGATTGCCGCCGCGCCCATTGGCG
AATCGTGCCAAGTGGAAGGCGTTGTTTTGCATCAAGAAGTGCAGTTCAAACCGCGCAAACAGCTCATCGCCCAAATTCAA
GACGAATCGGGTTCGGTGCTGAATTTGCGTTTTATCCATTTTTACCCCAATCATCAAAAACAATTGGCGCAGGGGCAAAC
GGTTCGGGCGTTGGGCGAAATCAAGCGCGGTTATTATGGCGATGAAATGATACACCCAAAAATTAAATCGCCCGAAAAAT
CCGATTTAGCACAATCACTTACGCCTATTTACCCAACCACAAACGGGCTAAATCAACCCACATTGCGAAAAGTGGTGCAA
ACCGCTTTGGAAACGGTGGATTTATCAGAAATTTTGCCCGATAACTATTTGAAAAAATACCAACTTATTCCGTTGGCGCA
AAGTTTGCGGACGTTGCACAATCCGCCGCCCGATTGGTCTTTGAGTATGCTGACCAATGGTGCGCTGCCTGAATGGCGAC
GTTTGAAATTTGATGAATTGTTGGCGCAACAGCTTTCCATGCGATTGGCGCGACAACGGCGACGTGCTGGCAATGCGCGA
GCATTGGTATCAACTGGAAAATTATCCGAAAAATTATTGAGTTATCTGCCATTTGATTTGACCAATGCGCAGAAAAAAGT
CTGTGCCGAAATCCGCGAAGATTTGGCAAAACCTGTGCCGATGCACCGTTTGTTGCAGGGCGATGTAGGCAGTGGCAAAA
CGATTGTGGCGGCGTTGTCGGCTTTGGTGGCGTTGGAGTCAGACGGCGTTCAGGTGGCGATTATGGCACCGACTGAAATT
TTGGCAGAACAACATTTTATTAAATTTAAACAATGGTTTGAGCCGTTAGGAATCAGCGTTGCGTGGCTTTCAGGCAGCCT
GAAAAAGAAAGAAAAAGACCAAGCCAAAGCTGCATTGGCGGACGGACGCATTCGCGTGGCGGTCGGGACACACGCTTTAT
TCCAAGATGATGTTTTATTTCATGATTTGGCGTTGGTGATTGTTGATGAACAGCACCGTTTTGGGGTGGCGCAGCGTTTG
GCATTGAAAAATAAGGGCAGCGATGTGCATCAGTTGATGATGTCGGCGACCCCGATTCCGCGCACTTTGGCGATGAGTTT
TTTTGCGGATTTGGACGTGTCGTCTATTGACGAATTGCCACCCAATCGTACACCCATTAAAACCAAATTAGTCAATAACT
TACGCCGTTCCGAAGTGGAAGGTTTTGTGTTGAACACTTGTCAAAAAGGGCAGCAGGCGTATTGGGTTTGCCCGCTTATT
GAAGAAAGCGAAGTTTTGCAGCTACAAACCGCAACCGACACGCTGGCGGAATTGCAGGCTGCTTTGCCGCAACTCAAAAT
TGGTTTGGTGCATGGGCGCATGAAAGCGGCGGAAAAAGCGGCGGTTATGGCGGAATTTATTTCAGGCAGCCTGAATGTTT
TGGTGGCGACAACCGTGATTGAAGTTGGCGTGGACGTGCCAAATGCGAGTTTGATGGTCATTGAACATGCGGAACGCATG
GGTTTGGCGCAGTTGCATCAGTTGCGCGGACGGGTAGGGCGTGGTGCGGCGGCGAGTACTTGCGTTTTGCTGTTTGCTGA
ACCGCTTGGACAGATTAGCAAAGCGCGTTTGAAAGTGATTTACGAGAACACAGACGGTTTTGAAATTGCGCGACAAGATT
TAGAAATTCGCGGGCCGGGCGAATTTTTGGGCGCGAGACAAAGCGGTGCGCCGATGTTGCGGTTTGCGGATTTGCAAGAA
GATTTGCTGTTGTTGGAAGCGGCACGAGAAGTGGCGGCGGATTTGGTGGCGCATCGCCCTGATGTGGTGGCGAAACATTT
AGAGCGGTGGTTGGGCAGCCGTGAAGGGTTTTTGGCGGCGTAA

Domains

Predicted by InterProScan.

DEAD/DEAH box helicase (DEAD)

(264-419)

RecG wedge domain (RecG_wedge)

(13-166)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(604-664)

Helicase conserved C-terminal domain (Helicase_C)

(467-575)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Neisseria meningitidis strain C311

73.785

99.853

0.737
  recG/mmsA Streptococcus pneumoniae R6

40.148

99.265

0.399
  recG/mmsA Streptococcus pneumoniae R36A

40.148

99.265

0.399
  recG Bacillus subtilis subsp. subtilis str. 168

40.895

95.294

0.39

Multiple sequence alignment