Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   EPB59_RS10820 Genome accession   NZ_CP035686
Coordinates   2384451..2385095 (+) Length   214 a.a.
NCBI ID   WP_055052009.1    Uniprot ID   -
Organism   Vibrio metoecus strain 2011V-1169     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2379451..2390095
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EPB59_RS10805 - 2380034..2381476 (-) 1443 WP_055052011.1 hypothetical protein -
  EPB59_RS10810 csrD 2381490..2383448 (-) 1959 WP_233420241.1 RNase E specificity factor CsrD -
  EPB59_RS10815 ssb 2383626..2384159 (-) 534 WP_000168293.1 single-stranded DNA-binding protein Machinery gene
  EPB59_RS10820 qstR 2384451..2385095 (+) 645 WP_055052009.1 LuxR C-terminal-related transcriptional regulator Regulator
  EPB59_RS10825 galU 2385268..2386140 (+) 873 WP_055052008.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  EPB59_RS10830 uvrA 2386295..2389117 (+) 2823 WP_154172713.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24786.65 Da        Isoelectric Point: 9.7353

>NTDB_id=343663 EPB59_RS10820 WP_055052009.1 2384451..2385095(+) (qstR) [Vibrio metoecus strain 2011V-1169]
MQRANYARTIYLLTTQPEALHPNIQAAITKLNLPVPVIDPERLLREYQSDKHKILLLDHNESSAIRHKLGPLKLTSPYFE
TILFNVEKRLKTEDLLTYGNLKGLFYANEETGFMAHGLGEIINGQNWLPRHVSSQLLHYYRYAFQTHQTQVTIDLTAREI
QILRCLQTGASNMQIAESLFISEFTVKSHLYQIFKKLNVKNRVKAIAWVNQNLL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=343663 EPB59_RS10820 WP_055052009.1 2384451..2385095(+) (qstR) [Vibrio metoecus strain 2011V-1169]
ATGCAACGAGCCAACTACGCACGCACCATTTACTTACTCACGACTCAACCCGAGGCTTTACATCCTAATATTCAGGCGGC
GATAACCAAACTCAATCTTCCGGTTCCGGTTATTGACCCAGAGCGCCTGCTGCGTGAATACCAGTCTGATAAACACAAAA
TTTTACTGCTCGACCATAACGAAAGTAGTGCTATTCGCCATAAACTAGGTCCTCTTAAACTCACCAGCCCATACTTCGAA
ACAATTTTATTCAATGTAGAAAAACGCTTAAAAACGGAAGATTTACTCACTTATGGGAATTTAAAAGGCCTGTTCTATGC
CAATGAAGAAACCGGCTTTATGGCTCATGGGTTAGGTGAAATCATTAATGGACAAAACTGGTTACCACGCCATGTCAGCA
GCCAACTGTTGCATTATTATCGTTACGCATTTCAAACTCATCAGACACAGGTAACGATCGATCTCACCGCTCGTGAAATC
CAAATTTTACGCTGCTTACAAACTGGCGCTTCCAACATGCAAATCGCAGAGAGTTTGTTTATCAGTGAGTTCACAGTGAA
ATCGCATCTTTACCAGATTTTTAAAAAGTTAAATGTGAAAAATAGAGTCAAAGCGATTGCTTGGGTAAACCAGAATTTAT
TGTGA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(155-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio cholerae strain A1552

90.654

100

0.907
  qstR Vibrio campbellii strain DS40M4

50.935

100

0.509
  qstR Vibrio parahaemolyticus RIMD 2210633

50.698

100

0.509

Multiple sequence alignment