Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   EPB59_RS10815 Genome accession   NZ_CP035686
Coordinates   2383626..2384159 (-) Length   177 a.a.
NCBI ID   WP_000168293.1    Uniprot ID   A0A067BLG6
Organism   Vibrio metoecus strain 2011V-1169     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2378626..2389159
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EPB59_RS10795 - 2379074..2379394 (-) 321 WP_055052013.1 MSHA biogenesis protein MshK -
  EPB59_RS10800 gspM 2379387..2380037 (-) 651 WP_055052012.1 type II secretion system protein GspM -
  EPB59_RS10805 - 2380034..2381476 (-) 1443 WP_055052011.1 hypothetical protein -
  EPB59_RS10810 csrD 2381490..2383448 (-) 1959 WP_233420241.1 RNase E specificity factor CsrD -
  EPB59_RS10815 ssb 2383626..2384159 (-) 534 WP_000168293.1 single-stranded DNA-binding protein Machinery gene
  EPB59_RS10820 qstR 2384451..2385095 (+) 645 WP_055052009.1 LuxR C-terminal-related transcriptional regulator Regulator
  EPB59_RS10825 galU 2385268..2386140 (+) 873 WP_055052008.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  EPB59_RS10830 uvrA 2386295..2389117 (+) 2823 WP_154172713.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 177 a.a.        Molecular weight: 19715.93 Da        Isoelectric Point: 5.7626

>NTDB_id=343662 EPB59_RS10815 WP_000168293.1 2383626..2384159(-) (ssb) [Vibrio metoecus strain 2011V-1169]
MASRGVNKVILIGNLGQDPEVRYMPSGGAVANITIATSETWRDKTTGEQKEKTEWHRVTLYGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQSGQDRYSTEVVVQGYNGIMQMLGGRTQQGGMPAQQGGMNAPQQGGWGQPQQPAKQHQPMQQSAPQQYA
QPQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 534 bp        

>NTDB_id=343662 EPB59_RS10815 WP_000168293.1 2383626..2384159(-) (ssb) [Vibrio metoecus strain 2011V-1169]
ATGGCAAGCCGTGGCGTGAACAAAGTAATTTTGATTGGTAACTTAGGCCAAGATCCTGAAGTGCGTTATATGCCAAGCGG
CGGCGCAGTTGCGAATATCACTATCGCGACCTCCGAAACTTGGCGTGATAAAACCACGGGTGAGCAAAAGGAAAAAACCG
AGTGGCACCGTGTGACGCTGTATGGAAAATTAGCCGAAGTGGCGGGTGAGTACCTACGCAAAGGTTCTCAAGTCTACATT
GAAGGTCAACTGCAAACACGTAAGTGGCAAGATCAAAGCGGTCAAGATCGTTATTCAACTGAAGTGGTTGTACAAGGTTA
TAACGGCATCATGCAGATGCTGGGTGGCCGTACTCAACAAGGTGGCATGCCAGCTCAACAAGGTGGTATGAATGCACCAC
AGCAAGGTGGTTGGGGACAACCTCAACAGCCAGCGAAGCAGCATCAGCCAATGCAACAATCGGCACCTCAGCAGTATGCT
CAGCCGCAATACAATGAGCCGCCAATGGATTTTGATGACGACATCCCATTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A067BLG6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

96.067

100

0.966
  ssb Glaesserella parasuis strain SC1401

52.747

100

0.542
  ssb Neisseria meningitidis MC58

47.568

100

0.497
  ssb Neisseria gonorrhoeae MS11

47.486

100

0.48

Multiple sequence alignment