Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   EPB59_RS00410 Genome accession   NZ_CP035686
Coordinates   89018..89536 (+) Length   172 a.a.
NCBI ID   WP_000794742.1    Uniprot ID   -
Organism   Vibrio metoecus strain 2011V-1169     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 84018..94536
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EPB59_RS00390 - 84243..86719 (-) 2477 Protein_77 penicillin-binding protein 1A -
  EPB59_RS00395 pilM 86861..87877 (+) 1017 WP_055029205.1 type IV pilus assembly protein PilM Machinery gene
  EPB59_RS00400 pilN 87867..88445 (+) 579 WP_055029206.1 PilN domain-containing protein Machinery gene
  EPB59_RS00405 pilO 88438..89028 (+) 591 WP_000135851.1 type 4a pilus biogenesis protein PilO Machinery gene
  EPB59_RS00410 pilP 89018..89536 (+) 519 WP_000794742.1 pilus assembly protein PilP Machinery gene
  EPB59_RS00415 pilQ 89562..91277 (+) 1716 WP_055033430.1 type IV pilus secretin PilQ family protein Machinery gene
  EPB59_RS00420 aroK 91464..91988 (+) 525 WP_000818614.1 shikimate kinase AroK -
  EPB59_RS00425 aroB 92016..93101 (+) 1086 WP_195707019.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19265.44 Da        Isoelectric Point: 10.3195

>NTDB_id=343633 EPB59_RS00410 WP_000794742.1 89018..89536(+) (pilP) [Vibrio metoecus strain 2011V-1169]
MKNNRFWLPLMVMSLLVGCKANQDDLVGFVAQVERDARKDVSKLKPILEFQVTTYQERKAREPFVLPREALVQSQPVVKA
DCWQPMPRAKNGPLERYPLSQLRLKGVMSSGGSISALVQTPTGNVVKVKAGQYLGNNNGKVTRVDDNYLLINETLPDGLG
CWNQRNVKLALK

Nucleotide


Download         Length: 519 bp        

>NTDB_id=343633 EPB59_RS00410 WP_000794742.1 89018..89536(+) (pilP) [Vibrio metoecus strain 2011V-1169]
ATGAAAAATAACCGATTCTGGCTACCACTGATGGTGATGTCGCTGTTGGTGGGATGCAAAGCCAACCAAGATGATTTGGT
GGGGTTTGTCGCACAAGTCGAGCGGGATGCGCGTAAGGATGTCAGCAAACTCAAGCCGATTTTGGAATTTCAAGTGACGA
CTTACCAAGAGCGTAAAGCGCGCGAGCCGTTTGTGTTGCCCCGAGAAGCCTTGGTGCAAAGTCAGCCTGTTGTTAAAGCT
GACTGCTGGCAGCCTATGCCTCGGGCTAAAAATGGTCCTCTGGAACGTTACCCACTCAGTCAATTGCGCTTAAAAGGTGT
GATGAGTAGCGGTGGCTCCATCTCTGCGCTGGTTCAGACACCAACGGGTAATGTGGTGAAAGTAAAAGCAGGGCAATATC
TAGGTAACAATAACGGAAAAGTAACCCGTGTTGACGATAACTATTTGTTAATTAATGAAACTTTGCCTGATGGCTTAGGG
TGTTGGAATCAGCGTAACGTCAAGCTGGCTTTAAAATAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(25-171)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Vibrio cholerae strain A1552

81.977

100

0.82
  pilP Vibrio campbellii strain DS40M4

57.558

100

0.576

Multiple sequence alignment