Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   PARA_RS00360 Genome accession   NC_015964
Coordinates   67962..68627 (+) Length   221 a.a.
NCBI ID   WP_014064029.1    Uniprot ID   -
Organism   Haemophilus parainfluenzae T3T1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 62962..73627
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PARA_RS00335 (PARA_00690) crp 64448..65116 (-) 669 WP_014064026.1 cAMP-activated global transcriptional regulator CRP Regulator
  PARA_RS00340 (PARA_00700) - 65133..65351 (-) 219 WP_014064027.1 YheU family protein -
  PARA_RS00345 (PARA_00710) slmA 65373..66026 (-) 654 WP_005698358.1 nucleoid occlusion factor SlmA -
  PARA_RS00350 (PARA_00720) dut 66030..66485 (-) 456 WP_005698440.1 dUTP diphosphatase -
  PARA_RS00355 (PARA_00730) coaBC 66558..67760 (-) 1203 WP_014064028.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  PARA_RS00360 (PARA_00740) radC 67962..68627 (+) 666 WP_014064029.1 RadC family protein Machinery gene
  PARA_RS00365 (PARA_00750) rpmB 68846..69082 (+) 237 WP_005599762.1 50S ribosomal protein L28 -
  PARA_RS00370 (PARA_00760) rpmG 69094..69264 (+) 171 WP_005613503.1 50S ribosomal protein L33 -
  PARA_RS00375 (PARA_00770) mutM 69337..70152 (+) 816 WP_014064030.1 DNA-formamidopyrimidine glycosylase -
  PARA_RS00380 (PARA_00780) - 70173..70892 (-) 720 WP_014064031.1 DUF554 domain-containing protein -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 25222.49 Da        Isoelectric Point: 7.0573

>NTDB_id=34359 PARA_RS00360 WP_014064029.1 67962..68627(+) (radC) [Haemophilus parainfluenzae T3T1]
MQTNSPLMPREKLLKYGVEALEDHELLAIFLRTGIKGCPVMALSHSVLQHFGSLRALLSADKEAFCKVKGLGITQFIQLQ
ATTEMTKRYLKQELLIEHVFSDTSTVKLYLQAELHHEEREIFMVLFLDNQHRLIKKERLFLGTINVTNVYPREIIKESLY
CNAAALILAHNHPSGIAEPSYSDKMITQKIIEAAELMEIRILDHFIVGKGTCYSFAEHNLL

Nucleotide


Download         Length: 666 bp        

>NTDB_id=34359 PARA_RS00360 WP_014064029.1 67962..68627(+) (radC) [Haemophilus parainfluenzae T3T1]
ATGCAGACAAACTCCCCCTTAATGCCTCGTGAAAAACTGTTGAAATATGGTGTTGAAGCCCTAGAGGATCACGAATTACT
TGCTATTTTCTTACGCACTGGGATTAAAGGTTGCCCTGTCATGGCATTATCACATAGCGTGCTGCAACATTTTGGCTCTC
TTCGAGCCTTATTAAGTGCAGATAAAGAAGCCTTTTGCAAAGTAAAAGGATTAGGCATTACGCAGTTTATTCAACTACAA
GCCACCACAGAAATGACCAAACGCTATCTCAAACAAGAATTGCTGATAGAACATGTATTTAGCGACACATCCACGGTAAA
ACTTTATCTTCAAGCAGAGCTTCACCACGAAGAACGTGAAATTTTTATGGTGTTATTTTTAGATAATCAACATCGTTTGA
TTAAAAAAGAGCGGTTATTTTTAGGCACAATTAATGTGACGAATGTTTATCCTCGTGAAATCATCAAAGAAAGCCTTTAC
TGCAATGCAGCCGCATTAATTTTAGCTCATAATCATCCTTCTGGTATCGCAGAACCCAGTTATTCAGATAAAATGATCAC
ACAAAAAATTATTGAAGCCGCCGAGTTAATGGAGATTCGTATTTTAGATCATTTTATTGTCGGCAAAGGGACTTGTTATT
CTTTTGCAGAGCATAATCTGTTATAG

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(101-219)

UPF0758 N-terminal (UPF0758_N)

(9-74)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

77.376

100

0.774
  radC Streptococcus pneumoniae TIGR4

38.208

95.928

0.367
  radC Streptococcus pneumoniae R6

37.736

95.928

0.362
  radC Streptococcus pneumoniae D39

37.736

95.928

0.362

Multiple sequence alignment