Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   SACTE_RS23965 Genome accession   NC_015953
Coordinates   5341123..5342745 (+) Length   540 a.a.
NCBI ID   WP_014048599.1    Uniprot ID   -
Organism   Streptomyces sp. SirexAA-E     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5336123..5347745
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SACTE_RS23930 (SACTE_4815) lepB 5336134..5336904 (+) 771 WP_014048593.1 signal peptidase I -
  SACTE_RS23935 (SACTE_4816) lepB 5336897..5337967 (+) 1071 WP_014048594.1 signal peptidase I -
  SACTE_RS23940 (SACTE_4817) lepB 5337873..5338874 (+) 1002 WP_014048595.1 signal peptidase I -
  SACTE_RS23945 (SACTE_4818) lepB 5338925..5339689 (+) 765 WP_014048596.1 signal peptidase I -
  SACTE_RS23950 (SACTE_4819) - 5339679..5340173 (+) 495 WP_014048597.1 NUDIX hydrolase -
  SACTE_RS23955 (SACTE_4820) - 5340237..5340545 (+) 309 WP_003965949.1 DUF2469 domain-containing protein -
  SACTE_RS23960 (SACTE_4821) - 5340764..5341123 (+) 360 WP_014048598.1 YraN family protein -
  SACTE_RS23965 (SACTE_4822) comM 5341123..5342745 (+) 1623 WP_014048599.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  SACTE_RS23970 (SACTE_4823) dprA 5342742..5343983 (+) 1242 WP_014048600.1 DNA-processing protein DprA -
  SACTE_RS23975 (SACTE_4824) whiG 5344233..5345069 (+) 837 WP_014048601.1 RNA polymerase sigma factor WhiG -
  SACTE_RS23980 (SACTE_4825) - 5345165..5345719 (+) 555 WP_019992281.1 TetR/AcrR family transcriptional regulator -
  SACTE_RS23985 (SACTE_4826) - 5345816..5346658 (-) 843 WP_014048603.1 M23 family metallopeptidase -

Sequence

Protein


Download         Length: 540 a.a.        Molecular weight: 55545.93 Da        Isoelectric Point: 7.9601

>NTDB_id=34339 SACTE_RS23965 WP_014048599.1 5341123..5342745(+) (comM) [Streptomyces sp. SirexAA-E]
MGFARACSVALVGVEGVVVEVQADLEPGVAAFTLVGLPDKSLVESRDRVRAAVVNSGAEWPQKKLTVGLSPASVPKGGSG
FDLAVACSVLGAAERIDPAAIADVVMIGELGLDGRVRPVRGVLPAVLAAAEAGYRQVVVPEQTAGEAALVPGVSVLGVRS
LRQLIAVLADEPVPDEPAADRSRPDPLQAGLMLPGAGVGTGLVAGGGRRTGQPPDLADVAGQTRARTALEVAAAGGHHLF
LSGPPGAGKTMLAERLTGILPPLSRRESLEVTAVHSVAGILPPGEPLVTRAPYCAPHHSATMQSLVGGGNGLPRPGAVSL
AHRGILFLDEAPEFSGRALDALRQPLESGHVVVARAAGVVRLPARFLMVLAANPCPCGRHTLTGAGCECPPSAVRRYQAR
LSGPLLDRVDLRVEVEPVGRADLMGGGGRGESSAEVAVRVREARVRAAERLAGTPWTTNSEVPGHELRTRLTAAPGALMA
AERDMERGLLTARGLDRVLRVAWTLADLRAADRPDASDIAVALELRTGIHRGVPLKAGAS

Nucleotide


Download         Length: 1623 bp        

>NTDB_id=34339 SACTE_RS23965 WP_014048599.1 5341123..5342745(+) (comM) [Streptomyces sp. SirexAA-E]
ATGGGGTTCGCGCGGGCGTGCTCGGTGGCGCTGGTGGGCGTCGAAGGCGTGGTGGTGGAGGTCCAAGCCGATCTGGAGCC
TGGCGTGGCGGCGTTCACGCTGGTCGGACTGCCGGACAAGAGCCTGGTGGAGAGCCGCGACCGGGTCAGGGCGGCGGTCG
TCAACTCCGGGGCCGAGTGGCCCCAGAAGAAGCTGACGGTGGGGCTGTCACCGGCCTCCGTACCCAAGGGAGGGTCGGGG
TTCGACCTCGCCGTGGCGTGCTCGGTGCTCGGTGCCGCCGAGCGGATCGATCCGGCGGCCATCGCCGACGTGGTGATGAT
CGGGGAGCTGGGCCTGGACGGCCGGGTGCGCCCGGTGCGCGGTGTTCTGCCCGCGGTCCTGGCCGCGGCGGAGGCAGGGT
ACCGCCAGGTCGTGGTCCCGGAGCAGACCGCAGGAGAGGCCGCGCTGGTGCCGGGCGTCTCGGTCCTCGGCGTCCGGAGT
CTGCGTCAGCTGATCGCGGTGCTCGCCGACGAGCCGGTGCCGGACGAGCCCGCCGCCGACCGGAGCCGGCCGGATCCGCT
GCAGGCCGGGCTCATGCTGCCGGGCGCGGGTGTCGGAACCGGGCTGGTGGCGGGCGGTGGACGGAGGACGGGGCAGCCGC
CCGACCTGGCGGACGTGGCCGGCCAGACCCGGGCCCGCACCGCGCTGGAGGTGGCCGCGGCAGGTGGGCATCATCTGTTC
CTCTCCGGCCCGCCGGGGGCGGGGAAGACGATGCTGGCCGAGCGGCTCACCGGAATCCTGCCGCCGCTGTCCCGGCGGGA
ATCCCTCGAAGTGACGGCGGTGCATTCCGTGGCGGGCATCCTCCCCCCGGGTGAACCGCTGGTCACCAGGGCGCCGTACT
GCGCCCCGCACCACTCGGCGACCATGCAGTCGCTGGTCGGCGGGGGCAACGGGCTGCCGCGGCCCGGCGCGGTCTCCCTG
GCACACCGTGGAATCCTTTTTCTGGACGAGGCGCCCGAATTCTCCGGGCGCGCGCTGGACGCCCTGCGCCAGCCCCTGGA
GTCCGGGCACGTGGTGGTCGCGCGTGCAGCCGGGGTGGTGCGGCTGCCGGCCCGGTTCCTGATGGTGCTGGCCGCCAATC
CGTGTCCGTGCGGGCGGCACACCTTGACGGGTGCGGGGTGCGAGTGCCCGCCCTCGGCGGTCCGCCGCTACCAGGCACGG
CTCTCCGGGCCCCTGCTGGACCGGGTGGACCTGCGGGTCGAGGTCGAGCCCGTGGGCAGGGCGGACCTGATGGGGGGCGG
CGGCCGGGGGGAGTCCTCGGCGGAGGTCGCCGTGCGGGTGCGCGAGGCCAGGGTGCGGGCCGCCGAGCGGCTGGCGGGCA
CCCCTTGGACCACCAACAGCGAAGTACCCGGCCATGAGCTCCGGACCCGGCTGACCGCGGCCCCGGGCGCGCTGATGGCC
GCCGAACGCGACATGGAGCGGGGCCTGCTGACAGCCCGGGGGCTGGACAGGGTGCTGCGCGTGGCGTGGACGCTCGCGGA
CCTCAGGGCCGCCGACCGTCCGGACGCCTCCGACATCGCGGTGGCTCTGGAGCTGCGTACGGGGATCCACCGGGGAGTGC
CACTGAAAGCCGGTGCGTCGTGA

Domains

Predicted by InterProScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(430-526)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(215-420)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

40.114

97.407

0.391
  comM Vibrio cholerae O1 biovar El Tor strain E7946

40.864

94.259

0.385
  comM Vibrio cholerae strain A1552

40.864

94.259

0.385
  comM Haemophilus influenzae Rd KW20

38.593

97.407

0.376
  comM Acinetobacter baylyi ADP1

38.14

97.593

0.372
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

37.739

96.667

0.365

Multiple sequence alignment