Detailed information    

insolico Bioinformatically predicted

Overview

Name   ysxA/radC   Type   Machinery gene
Locus tag   F8M43_RS14545 Genome accession   NZ_CP044498
Coordinates   2759812..2760507 (-) Length   231 a.a.
NCBI ID   WP_015251546.1    Uniprot ID   -
Organism   Bacillus subtilis strain ms-2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2754812..2765507
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F8M43_RS14520 minD 2755748..2756554 (-) 807 WP_004398624.1 septum site-determining protein MinD -
  F8M43_RS14525 minC 2756556..2757236 (-) 681 WP_004398901.1 septum site-determining protein MinC -
  F8M43_RS14530 mreD 2757289..2757807 (-) 519 WP_004398811.1 rod shape-determining protein MreD -
  F8M43_RS14535 mreC 2757804..2758676 (-) 873 WP_003222609.1 rod shape-determining protein MreC -
  F8M43_RS14540 mreB 2758707..2759720 (-) 1014 WP_003229650.1 cell shape-determining protein MreB -
  F8M43_RS14545 ysxA/radC 2759812..2760507 (-) 696 WP_015251546.1 DNA repair protein RadC Machinery gene
  F8M43_RS14550 maf 2760544..2761113 (-) 570 WP_004398496.1 Maf family nucleotide pyrophosphatase -
  F8M43_RS14555 spoIIB 2761266..2762261 (-) 996 WP_038427816.1 stage II sporulation protein SpoIIB -
  F8M43_RS14560 comC 2762395..2763141 (-) 747 WP_072692713.1 A24 family peptidase Machinery gene
  F8M43_RS14565 folC 2763283..2764575 (-) 1293 WP_038427817.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -

Sequence

Protein


Download         Length: 231 a.a.        Molecular weight: 26165.52 Da        Isoelectric Point: 8.3195

>NTDB_id=343246 F8M43_RS14545 WP_015251546.1 2759812..2760507(-) (ysxA/radC) [Bacillus subtilis strain ms-2]
MVIRDLPLKLKDFPMKEKPRERLLKVGAENLANHELLAILLRTGTKHESVLDLSNRLLRSFDGLRLLKEASVEELSSIPG
IGMVKAIQILAAVELGSRIHKLANEEHFVIRSPEDGANLVMEDMRFLTQEHFVCLYLNTKNQVIHKRTVFIGSLNSSIVH
PREVFKEAFKRSAASFICVHNHPSGDPTPSREDIEVTRRLFECGNLIGIELLDHLVIGDKKFVSLKEKGYL

Nucleotide


Download         Length: 696 bp        

>NTDB_id=343246 F8M43_RS14545 WP_015251546.1 2759812..2760507(-) (ysxA/radC) [Bacillus subtilis strain ms-2]
TTGGTCATACGCGATCTGCCATTAAAACTCAAAGATTTCCCAATGAAAGAAAAGCCAAGGGAACGGCTCCTGAAAGTCGG
AGCCGAGAACTTAGCGAATCATGAACTTTTGGCTATATTATTGCGGACAGGGACTAAACACGAATCTGTTTTGGACCTGT
CAAACCGGCTGCTGCGCTCATTTGACGGGCTGCGTCTGCTCAAGGAAGCATCGGTTGAAGAGCTGTCAAGCATCCCGGGA
ATCGGTATGGTAAAAGCGATTCAAATACTGGCTGCAGTTGAGCTTGGAAGCCGGATTCACAAATTAGCCAACGAAGAACA
TTTCGTTATTCGCTCCCCGGAAGACGGCGCTAATCTCGTCATGGAGGATATGCGCTTTTTAACCCAGGAGCATTTTGTCT
GTTTATACTTAAATACAAAAAATCAAGTCATCCATAAACGCACCGTATTTATCGGAAGCCTGAATTCATCTATTGTCCAC
CCGCGAGAGGTGTTTAAAGAAGCGTTTAAACGATCTGCCGCTTCCTTTATCTGTGTTCATAATCATCCTTCTGGAGATCC
GACGCCGAGCAGGGAGGATATTGAAGTGACAAGACGGCTGTTTGAATGCGGAAACCTGATTGGCATCGAGCTGCTTGACC
ATTTGGTGATCGGGGATAAAAAATTTGTGAGTTTAAAGGAAAAAGGATATTTGTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(110-229)

UPF0758 N-terminal (UPF0758_N)

(11-87)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

99.567

100

0.996
  radC Streptococcus pneumoniae TIGR4

48.095

90.909

0.437
  radC Streptococcus pneumoniae R6

47.619

90.909

0.433
  radC Streptococcus pneumoniae D39

47.619

90.909

0.433
  radC Streptococcus gordonii str. Challis substr. CH1

46.667

90.909

0.424