Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   BGR_RS05955 Genome accession   NC_012846
Coordinates   1394780..1395286 (-) Length   168 a.a.
NCBI ID   WP_015856526.1    Uniprot ID   A0A336NDS4
Organism   Bartonella grahamii as4aup     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1389780..1400286
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BGR_RS05935 (Bgr_12340) - 1390110..1390622 (-) 513 WP_015856522.1 peptidylprolyl isomerase -
  BGR_RS05940 (Bgr_12350) - 1390641..1391234 (-) 594 WP_015856523.1 peptidylprolyl isomerase -
  BGR_RS05945 (Bgr_12360) coaD 1391237..1391743 (-) 507 WP_015856524.1 pantetheine-phosphate adenylyltransferase -
  BGR_RS05950 (Bgr_12370) gyrA 1391768..1394551 (-) 2784 WP_015856525.1 DNA gyrase subunit A -
  BGR_RS05955 (Bgr_12380) ssb 1394780..1395286 (-) 507 WP_015856526.1 single-stranded DNA-binding protein Machinery gene
  BGR_RS05965 (Bgr_12390) uvrA 1395620..1398535 (+) 2916 WP_015856527.1 excinuclease ABC subunit UvrA -
  BGR_RS05970 (Bgr_12410) - 1399598..1399936 (+) 339 WP_015856528.1 P-II family nitrogen regulator -

Sequence

Protein


Download         Length: 168 a.a.        Molecular weight: 18838.65 Da        Isoelectric Point: 6.4875

>NTDB_id=34323 BGR_RS05955 WP_015856526.1 1394780..1395286(-) (ssb) [Bartonella grahamii as4aup]
MAGSLNKVILIGNLGADPEIRRLNSGDQVANLRIATSESWRDRNTNERKERTEWHNIVIFNENLVKVAEQYLKKGSKIYI
EGQLQTRKWQDQNGNDRYTTEVVLQKYRGELQMLDGRGAAGGEQGASQGGSYSGGFADSNSNQRNTFGQNNNQLGESFSH
KLDDDVPF

Nucleotide


Download         Length: 507 bp        

>NTDB_id=34323 BGR_RS05955 WP_015856526.1 1394780..1395286(-) (ssb) [Bartonella grahamii as4aup]
ATGGCTGGTAGCCTTAATAAAGTTATTTTGATTGGTAATCTTGGTGCGGATCCTGAAATCCGCCGTTTGAATTCTGGTGA
CCAAGTGGCAAATTTACGTATTGCTACTTCAGAAAGTTGGCGTGATCGGAATACAAATGAGCGAAAAGAACGCACTGAGT
GGCATAATATTGTTATTTTTAATGAAAACCTTGTCAAAGTTGCAGAGCAATATTTAAAAAAAGGCAGCAAAATTTACATT
GAGGGGCAGTTACAGACACGAAAATGGCAAGATCAAAATGGAAATGACCGTTATACAACAGAGGTTGTTTTGCAAAAGTA
CCGTGGCGAATTACAAATGCTTGATGGGCGGGGAGCCGCGGGCGGGGAGCAAGGAGCAAGTCAAGGGGGGAGTTATAGTG
GTGGCTTTGCCGATAGTAACTCAAATCAGAGAAATACGTTTGGTCAAAATAATAATCAATTGGGAGAAAGTTTTTCACAC
AAATTAGATGATGACGTACCTTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A336NDS4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

48.936

100

0.548
  ssb Vibrio cholerae strain A1552

50.286

100

0.524
  ssb Neisseria meningitidis MC58

38.378

100

0.423
  ssb Neisseria gonorrhoeae MS11

38.378

100

0.423

Multiple sequence alignment