Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   MEXAM1_RS10570 Genome accession   NC_012808
Coordinates   2309655..2310224 (-) Length   189 a.a.
NCBI ID   WP_003603579.1    Uniprot ID   C5APZ6
Organism   Methylorubrum extorquens AM1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2304655..2315224
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MEXAM1_RS10550 (MexAM1_META1p2234) - 2304792..2306894 (-) 2103 WP_244426923.1 TonB-dependent siderophore receptor -
  MEXAM1_RS10555 (MexAM1_META1p2235) panC 2307308..2308165 (-) 858 WP_003603576.1 pantoate--beta-alanine ligase -
  MEXAM1_RS10560 (MexAM1_META1p2236) - 2308241..2308600 (-) 360 WP_003603577.1 hypothetical protein -
  MEXAM1_RS10565 (MexAM1_META1p2237) - 2308673..2309278 (-) 606 WP_003603578.1 XRE family transcriptional regulator -
  MEXAM1_RS10570 (MexAM1_META1p2238) ssb 2309655..2310224 (-) 570 WP_003603579.1 single-stranded DNA-binding protein Machinery gene
  MEXAM1_RS10575 (MexAM1_META1p2239) - 2310459..2311475 (-) 1017 WP_003603580.1 NADP-dependent oxidoreductase -
  MEXAM1_RS10580 (MexAM1_META1p2241) - 2311568..2311975 (+) 408 WP_012752800.1 DUF4174 domain-containing protein -
  MEXAM1_RS10585 (MexAM1_META1p2242) - 2312028..2312593 (-) 566 Protein_2108 hypothetical protein -
  MEXAM1_RS10590 (MexAM1_META1p2243) - 2312823..2313596 (+) 774 WP_003604644.1 phosphodiester glycosidase family protein -
  MEXAM1_RS10595 (MexAM1_META1p2244) - 2313751..2314869 (-) 1119 WP_003604643.1 NADH:flavin oxidoreductase/NADH oxidase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 20116.86 Da        Isoelectric Point: 6.0164

>NTDB_id=34303 MEXAM1_RS10570 WP_003603579.1 2309655..2310224(-) (ssb) [Methylorubrum extorquens AM1]
MAGSVNKVILVGNLGRDPETRRLSSGDPVVNLRIATSESWKDKASGERKEKTEWHSVVIYNDNLAKVAEQYLRKGSKVYI
EGQLQTRKWTDQSGAEKYTTEVVLQRFRGEMTILDGRGGGGGGDFAGEDDGGGQISRGGDRGSDRGGDRGGRDDYGSSRS
GGGGGGGDRRPSSGGGAKPNYDLDDDIPF

Nucleotide


Download         Length: 570 bp        

>NTDB_id=34303 MEXAM1_RS10570 WP_003603579.1 2309655..2310224(-) (ssb) [Methylorubrum extorquens AM1]
ATGGCGGGCAGCGTCAACAAGGTGATTCTGGTCGGCAATCTCGGGCGCGATCCCGAGACCCGGCGTCTGTCCTCGGGCGA
CCCCGTGGTGAACCTGCGCATCGCGACGTCGGAGTCCTGGAAGGACAAGGCGTCGGGCGAGCGCAAGGAAAAGACCGAGT
GGCACTCGGTCGTGATCTACAACGACAACCTCGCCAAGGTGGCGGAGCAGTATCTGCGCAAGGGCTCGAAGGTCTACATC
GAGGGCCAGCTTCAGACCCGCAAGTGGACCGACCAATCGGGCGCGGAGAAGTACACCACCGAAGTGGTGCTCCAGCGTTT
CCGCGGCGAGATGACGATTCTCGACGGCCGTGGCGGCGGTGGCGGCGGCGACTTCGCGGGCGAGGACGACGGCGGCGGCC
AGATCAGCCGCGGCGGCGACCGGGGTAGTGATCGCGGCGGCGACCGCGGTGGGCGCGACGATTACGGCTCGAGCCGCTCC
GGTGGCGGCGGCGGCGGCGGCGATCGCCGGCCCTCCTCGGGTGGCGGCGCCAAGCCGAACTACGACCTCGACGACGACAT
CCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB C5APZ6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

47.179

100

0.487
  ssb Vibrio cholerae strain A1552

48.649

97.884

0.476
  ssb Neisseria gonorrhoeae MS11

40.86

98.413

0.402
  ssb Neisseria meningitidis MC58

40.323

98.413

0.397

Multiple sequence alignment