Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   EU243_RS07015 Genome accession   NZ_CP035533
Coordinates   1380031..1381416 (+) Length   461 a.a.
NCBI ID   WP_046560106.1    Uniprot ID   -
Organism   Bacillus velezensis strain DTU001     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1375031..1386416
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EU243_RS06995 (EU243_07105) - 1376179..1376826 (-) 648 WP_003151384.1 YigZ family protein -
  EU243_RS07000 (EU243_07110) degS 1377048..1378211 (+) 1164 WP_003151385.1 two-component sensor histidine kinase DegS Regulator
  EU243_RS07005 (EU243_07115) degU 1378288..1378977 (+) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  EU243_RS07010 (EU243_07120) - 1379075..1379923 (+) 849 WP_044052857.1 DegV family protein -
  EU243_RS07015 (EU243_07125) comFA 1380031..1381416 (+) 1386 WP_046560106.1 DEAD/DEAH box helicase Machinery gene
  EU243_RS07020 (EU243_07130) - 1381474..1381758 (+) 285 WP_003151389.1 late competence development ComFB family protein -
  EU243_RS07025 (EU243_07135) comFC 1381764..1382453 (+) 690 WP_197080391.1 phosphoribosyltransferase family protein Machinery gene
  EU243_RS07030 (EU243_07140) - 1382527..1382946 (+) 420 WP_003151392.1 TIGR03826 family flagellar region protein -
  EU243_RS07035 (EU243_07145) flgM 1383016..1383282 (+) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  EU243_RS07040 (EU243_07150) - 1383297..1383779 (+) 483 WP_003151394.1 flagellar protein FlgN -
  EU243_RS07045 (EU243_07155) flgK 1383795..1385312 (+) 1518 WP_003151395.1 flagellar hook-associated protein FlgK -
  EU243_RS07050 (EU243_07160) flgL 1385324..1386241 (+) 918 WP_003151396.1 flagellar hook-associated protein FlgL -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 52557.10 Da        Isoelectric Point: 10.1601

>NTDB_id=342984 EU243_RS07015 WP_046560106.1 1380031..1381416(+) (comFA) [Bacillus velezensis strain DTU001]
MAEGASEFSEVRDFFYGRHLLRSEIPFSDHRIKRFIEKEYITAEPSIIRRKNCYVCQRCGQSDQACFAAFWAPSAKRQIT
YCRACVMMGRADELTSLYSWNQAPENRWKPVKLSWEGTLTDGQKQAAAALTDAIKERQELLVWAVCGSGKTEMLFPGIEF
ALNQGLRVCVATPRTDVVLELLPRLKKAFEKVDVSALYGGSEDKGRLTPLMISTAHQLMRYRDIFDVMIIDEVDAFPFSA
DETLRFAVDKARKKNSALVYVTATPSDTLKKNAEAGLLKSVRIPARYHRKPLPEPRFLWCGNWKKKLQKGKLPRSVTDWV
RQKLQSQLPVFLFVPSVHVLKKTTDYFQKLNIRAEGVHAEDTFRKDKVKRFRDGRLDLLVTTTILERGVTVPKVQTCVLG
AEAPIFTESALVQIAGRTGRHYKYFSGDVVLFHFGITVGMKKAKKHIEHMNKLAQKSKLLD

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=342984 EU243_RS07015 WP_046560106.1 1380031..1381416(+) (comFA) [Bacillus velezensis strain DTU001]
ATGGCCGAAGGTGCTTCAGAATTTTCAGAGGTGCGGGATTTCTTTTACGGCCGGCATTTATTGAGATCTGAGATACCGTT
TTCAGATCATCGCATCAAGCGTTTTATAGAAAAAGAATATATAACGGCCGAGCCGTCAATCATCCGCCGGAAAAACTGTT
ACGTCTGCCAACGATGCGGTCAGTCTGATCAAGCCTGCTTTGCGGCATTTTGGGCGCCCTCTGCCAAAAGGCAGATTACC
TATTGCCGTGCCTGTGTCATGATGGGAAGGGCTGATGAACTGACATCATTATATTCTTGGAATCAAGCCCCTGAAAACAG
ATGGAAGCCTGTAAAGCTTTCTTGGGAAGGAACACTGACAGACGGACAGAAGCAGGCCGCCGCCGCGCTTACAGATGCGA
TAAAAGAGAGACAAGAGCTGTTAGTATGGGCGGTTTGCGGATCGGGGAAAACAGAGATGCTGTTTCCTGGTATCGAGTTT
GCCCTGAATCAAGGTTTGCGCGTCTGTGTCGCGACTCCGCGTACAGATGTCGTACTTGAACTGCTGCCGAGACTGAAAAA
AGCATTTGAGAAAGTCGACGTTTCTGCTTTGTACGGCGGCAGCGAGGACAAAGGCCGCTTGACTCCGCTGATGATTTCAA
CCGCTCACCAGCTGATGCGCTACCGAGACATTTTTGATGTCATGATAATAGATGAAGTAGATGCGTTTCCTTTTTCAGCC
GATGAGACATTAAGGTTCGCTGTTGATAAAGCGAGGAAGAAAAACAGCGCCCTTGTTTATGTAACGGCAACTCCTTCTGA
CACATTAAAAAAGAATGCTGAAGCAGGTTTGCTGAAAAGCGTTCGCATACCGGCCAGATATCATCGGAAACCCCTCCCGG
AGCCGCGTTTTTTGTGGTGCGGCAATTGGAAGAAGAAGCTTCAGAAAGGAAAACTGCCGCGCTCTGTAACGGATTGGGTC
CGCCAAAAACTTCAATCACAGCTGCCGGTTTTCTTATTCGTTCCGTCTGTACACGTATTGAAAAAGACAACGGATTATTT
TCAGAAATTAAACATACGGGCAGAAGGCGTACATGCGGAAGACACATTCAGAAAGGATAAAGTGAAACGGTTCAGAGACG
GCCGGCTTGATCTGCTGGTAACGACTACGATTTTAGAAAGAGGGGTTACCGTGCCCAAAGTTCAGACATGTGTCCTCGGC
GCAGAAGCACCTATCTTTACTGAGAGCGCGCTCGTACAGATCGCGGGCAGAACGGGAAGGCATTATAAATATTTCAGCGG
TGATGTCGTCCTGTTTCATTTCGGAATTACAGTCGGAATGAAAAAAGCAAAAAAACATATAGAACATATGAACAAATTGG
CACAAAAAAGTAAATTGTTGGACTAG

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(328-421)

Type III restriction enzyme, res subunit (ResIII)

(118-266)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

63.261

99.783

0.631

Multiple sequence alignment