Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   EU243_RS07005 Genome accession   NZ_CP035533
Coordinates   1378288..1378977 (+) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus velezensis strain DTU001     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1373288..1383977
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EU243_RS06985 (EU243_07095) - 1373794..1374870 (+) 1077 WP_003151382.1 glycosyltransferase family 4 protein -
  EU243_RS06990 (EU243_07100) - 1374960..1376174 (-) 1215 WP_003151383.1 LCP family protein -
  EU243_RS06995 (EU243_07105) - 1376179..1376826 (-) 648 WP_003151384.1 YigZ family protein -
  EU243_RS07000 (EU243_07110) degS 1377048..1378211 (+) 1164 WP_003151385.1 two-component sensor histidine kinase DegS Regulator
  EU243_RS07005 (EU243_07115) degU 1378288..1378977 (+) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  EU243_RS07010 (EU243_07120) - 1379075..1379923 (+) 849 WP_044052857.1 DegV family protein -
  EU243_RS07015 (EU243_07125) comFA 1380031..1381416 (+) 1386 WP_046560106.1 DEAD/DEAH box helicase Machinery gene
  EU243_RS07020 (EU243_07130) - 1381474..1381758 (+) 285 WP_003151389.1 late competence development ComFB family protein -
  EU243_RS07025 (EU243_07135) comFC 1381764..1382453 (+) 690 WP_197080391.1 phosphoribosyltransferase family protein Machinery gene
  EU243_RS07030 (EU243_07140) - 1382527..1382946 (+) 420 WP_003151392.1 TIGR03826 family flagellar region protein -
  EU243_RS07035 (EU243_07145) flgM 1383016..1383282 (+) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  EU243_RS07040 (EU243_07150) - 1383297..1383779 (+) 483 WP_003151394.1 flagellar protein FlgN -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=342983 EU243_RS07005 WP_003219701.1 1378288..1378977(+) (degU) [Bacillus velezensis strain DTU001]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=342983 EU243_RS07005 WP_003219701.1 1378288..1378977(+) (degU) [Bacillus velezensis strain DTU001]
GTGACTAAAGTAAATATTGTTATTATCGACGACCATCAACTATTCCGTGAGGGTGTAAAAAGAATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCAGAAGGTGACGATGGAGATGAGGCGGCTCGAATCGTCGAGCATTATCATCCCGATGTTGTCA
TAATGGACATCAATATGCCGAATGTAAATGGAGTAGAGGCTACTAAACAGCTTGTTGAGCTGTACCCTGAATCTAAGGTG
ATTATCCTCTCCATCCATGATGATGAAAACTATGTGACTCATGCTTTAAAAACAGGTGCAAGAGGCTATCTCCTGAAAGA
GATGGACGCAGATACTTTAATCGAAGCAGTGAAAGTGGTAGCCGAGGGCGGTTCTTACCTTCACCCGAAAGTAACCCACA
ATCTTGTCAACGAATTCCGCCGTCTTGCGACAAGCGGAGTTTCTGCTCATCCTCAGCATGAGGTTTATCCGGAAATCCGG
AGACCATTACATATATTAACGAGACGGGAATGTGAAGTGCTGCAAATGCTTGCAGACGGAAAAAGCAACCGCGGAATCGG
TGAATCATTGTTTATCAGTGAGAAAACAGTGAAAAACCACGTGAGTAATATTTTGCAGAAAATGAACGTTAATGACCGGA
CACAAGCCGTTGTCGTAGCCATTAAAAACGGCTGGGTAGAGATGCGTTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment