Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   EU243_RS07025 Genome accession   NZ_CP035533
Coordinates   1381764..1382453 (+) Length   229 a.a.
NCBI ID   WP_197080391.1    Uniprot ID   -
Organism   Bacillus velezensis strain DTU001     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1376764..1387453
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EU243_RS07000 (EU243_07110) degS 1377048..1378211 (+) 1164 WP_003151385.1 two-component sensor histidine kinase DegS Regulator
  EU243_RS07005 (EU243_07115) degU 1378288..1378977 (+) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  EU243_RS07010 (EU243_07120) - 1379075..1379923 (+) 849 WP_044052857.1 DegV family protein -
  EU243_RS07015 (EU243_07125) comFA 1380031..1381416 (+) 1386 WP_046560106.1 DEAD/DEAH box helicase Machinery gene
  EU243_RS07020 (EU243_07130) - 1381474..1381758 (+) 285 WP_003151389.1 late competence development ComFB family protein -
  EU243_RS07025 (EU243_07135) comFC 1381764..1382453 (+) 690 WP_197080391.1 phosphoribosyltransferase family protein Machinery gene
  EU243_RS07030 (EU243_07140) - 1382527..1382946 (+) 420 WP_003151392.1 TIGR03826 family flagellar region protein -
  EU243_RS07035 (EU243_07145) flgM 1383016..1383282 (+) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  EU243_RS07040 (EU243_07150) - 1383297..1383779 (+) 483 WP_003151394.1 flagellar protein FlgN -
  EU243_RS07045 (EU243_07155) flgK 1383795..1385312 (+) 1518 WP_003151395.1 flagellar hook-associated protein FlgK -
  EU243_RS07050 (EU243_07160) flgL 1385324..1386241 (+) 918 WP_003151396.1 flagellar hook-associated protein FlgL -
  EU243_RS07055 (EU243_07165) - 1386332..1386901 (+) 570 WP_048367096.1 DUF6470 family protein -
  EU243_RS07060 (EU243_07170) fliW 1386931..1387362 (+) 432 WP_003151399.1 flagellar assembly protein FliW -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25340.04 Da        Isoelectric Point: 8.4899

>NTDB_id=342985 EU243_RS07025 WP_197080391.1 1381764..1382453(+) (comFC) [Bacillus velezensis strain DTU001]
MNCLLCDSPISSSLTWRSLFSLAPEQEVCTICSSRFEKIEDPVCSICGRPQESNEKCADCAARESKTEKRFLLRQNRSVY
LYNDAMKHSLARFKFRGDAKIIQAFGRDFAAGFKAAYPSNTHTLIPIPLSGERLAERGFNQSELLASLLGMPVIFPLIRL
NNEKQSKKSKTERLSAEKKFSAAENSAEGMNVILIDDIYTTGATLHQAAEVLLTAGKASSVSSFTLIRS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=342985 EU243_RS07025 WP_197080391.1 1381764..1382453(+) (comFC) [Bacillus velezensis strain DTU001]
CTGAATTGTTTATTGTGTGACTCACCAATTTCAAGTTCATTGACTTGGAGATCTCTGTTTTCTCTGGCGCCCGAGCAAGA
GGTATGCACCATATGCAGCAGCCGATTCGAAAAAATTGAAGACCCCGTATGCAGTATATGCGGGAGGCCTCAGGAGTCAA
ATGAAAAATGCGCTGATTGTGCGGCCCGGGAATCAAAAACGGAAAAGCGCTTTTTGCTGCGGCAAAACCGTTCGGTATAT
TTGTATAATGATGCGATGAAGCACTCATTAGCCCGGTTTAAATTCAGGGGTGATGCGAAAATCATTCAAGCATTTGGACG
TGACTTTGCTGCCGGCTTTAAAGCGGCATATCCATCAAATACACATACTCTCATCCCTATTCCGCTGAGCGGCGAACGGC
TGGCGGAACGCGGATTCAATCAATCCGAGCTGCTGGCCTCTCTGCTCGGAATGCCCGTCATTTTCCCCCTCATCCGACTG
AACAATGAAAAACAATCCAAAAAGAGCAAAACAGAAAGGCTGTCCGCAGAAAAAAAGTTTTCAGCAGCCGAAAACTCGGC
CGAAGGTATGAACGTCATCTTAATAGACGATATTTATACGACGGGCGCCACACTGCATCAAGCCGCCGAAGTCCTGCTGA
CAGCGGGTAAAGCGTCATCGGTCTCCTCTTTTACTTTAATCAGGAGCTAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(2-61)

Phosphoribosyl transferase domain (Pribosyltran)

(144-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

60.352

99.127

0.598

Multiple sequence alignment