Detailed information    

insolico Bioinformatically predicted

Overview

Name   cipB   Type   Regulator
Locus tag   FSA28_RS02125 Genome accession   NZ_CP044495
Coordinates   426344..426574 (+) Length   76 a.a.
NCBI ID   WP_002275977.1    Uniprot ID   Q8DVP7
Organism   Streptococcus mutans strain UA140     
Function   indirect induction of ComX; activation of comRS system (predicted from homology)   
Competence regulation

Genomic Context

Location: 421344..431574
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FSA28_RS02105 (FSA28_0204) - 421919..422215 (+) 297 WP_002263922.1 RNase P modulator RnpM -
  FSA28_RS02110 (FSA28_0205) - 422208..422510 (+) 303 WP_002262601.1 YlxQ-related RNA-binding protein -
  FSA28_RS02115 (FSA28_0206) infB 422531..425281 (+) 2751 WP_002291635.1 translation initiation factor IF-2 -
  FSA28_RS02120 (FSA28_0207) rbfA 425515..425865 (+) 351 WP_002262599.1 30S ribosome-binding factor RbfA -
  FSA28_RS02125 (FSA28_0209) cipB 426344..426574 (+) 231 WP_002275977.1 bacteriocin class II family protein Regulator
  FSA28_RS02130 (FSA28_0210) - 426965..427408 (+) 444 WP_002291398.1 CopY/TcrY family copper transport repressor -
  FSA28_RS02135 (FSA28_0211) - 427405..429633 (+) 2229 WP_002291399.1 heavy metal translocating P-type ATPase -
  FSA28_RS02140 (FSA28_0212) copZ 429646..429849 (+) 204 WP_002264873.1 copper chaperone CopZ -
  FSA28_RS02145 (FSA28_0213) - 430096..430917 (+) 822 WP_002351286.1 Cof-type HAD-IIB family hydrolase -
  FSA28_RS02150 (FSA28_0214) - 431024..431545 (-) 522 WP_172964911.1 YgjV family protein -

Sequence

Protein


Download         Length: 76 a.a.        Molecular weight: 7229.19 Da        Isoelectric Point: 3.7781

>NTDB_id=342985 FSA28_RS02125 WP_002275977.1 426344..426574(+) (cipB) [Streptococcus mutans strain UA140]
MNTQAFEQFNVMDNEALSTVEGGGMIRCALGTAGSAGLGFVGGMGAGTVTLPVVGTVSGAALGGWSGAAVGAATFC

Nucleotide


Download         Length: 231 bp        

>NTDB_id=342985 FSA28_RS02125 WP_002275977.1 426344..426574(+) (cipB) [Streptococcus mutans strain UA140]
ATGAATACACAAGCATTTGAACAATTTAACGTAATGGATAATGAAGCACTTTCAACTGTTGAGGGTGGTGGTATGATTAG
ATGTGCACTTGGCACAGCTGGTTCTGCAGGTTTAGGATTTGTAGGGGGTATGGGAGCTGGTACAGTTACTCTCCCAGTCG
TTGGTACAGTATCTGGAGCGGCTTTAGGAGGCTGGTCTGGAGCAGCTGTAGGTGCTGCTACTTTTTGTTGA

Domains

Predicted by InterProScan.

Bacteriocin class II with double-glycine leader peptide (Bacteriocin_IIc)

(6-70)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8DVP7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cipB Streptococcus mutans UA159

71.429

55.263

0.395

Multiple sequence alignment