Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvB   Type   Machinery gene
Locus tag   SACTE_RS04475 Genome accession   NC_015953
Coordinates   1054474..1055559 (-) Length   361 a.a.
NCBI ID   WP_014044840.1    Uniprot ID   -
Organism   Streptomyces sp. SirexAA-E     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1049474..1060559
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SACTE_RS04455 (SACTE_0917) - 1050274..1050828 (-) 555 WP_014044836.1 adenine phosphoribosyltransferase -
  SACTE_RS04460 (SACTE_0918) secF 1050825..1051931 (-) 1107 WP_014044837.1 protein translocase subunit SecF -
  SACTE_RS04465 (SACTE_0919) secD 1051933..1053684 (-) 1752 WP_014044838.1 protein translocase subunit SecD -
  SACTE_RS04470 (SACTE_0920) yajC 1053832..1054305 (-) 474 WP_014044839.1 preprotein translocase subunit YajC -
  SACTE_RS04475 (SACTE_0921) ruvB 1054474..1055559 (-) 1086 WP_014044840.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  SACTE_RS04480 (SACTE_0922) ruvA 1055655..1056281 (-) 627 WP_014044841.1 Holliday junction branch migration protein RuvA -
  SACTE_RS04485 (SACTE_0923) ruvC 1056278..1056811 (-) 534 WP_014044842.1 crossover junction endodeoxyribonuclease RuvC -
  SACTE_RS04490 (SACTE_0924) - 1056942..1057694 (-) 753 WP_014044843.1 YebC/PmpR family DNA-binding transcriptional regulator -
  SACTE_RS04495 (SACTE_0925) pdxT 1057756..1058349 (-) 594 WP_014044844.1 pyridoxal 5'-phosphate synthase glutaminase subunit PdxT -
  SACTE_RS04500 (SACTE_0926) pdxS 1058356..1059270 (-) 915 WP_014044845.1 pyridoxal 5'-phosphate synthase lyase subunit PdxS -
  SACTE_RS04505 (SACTE_0927) - 1059437..1059982 (-) 546 WP_014044846.1 hypothetical protein -

Sequence

Protein


Download         Length: 361 a.a.        Molecular weight: 38728.18 Da        Isoelectric Point: 4.8518

>NTDB_id=34292 SACTE_RS04475 WP_014044840.1 1054474..1055559(-) (ruvB) [Streptomyces sp. SirexAA-E]
MNWDETGPDTGELTDERFHDRLVDGGADGEDTAVEAALRPKDLGEFIGQEKVREQLDLVLKAALARGATADHVLLSGAPG
LGKTTLSMIIAAEMNAPIRITSGPAIQHAGDLAAILSSLQEGEVLFLDEIHRMSRPAEEMLYMAMEDFRVDVIVGKGPGA
TAIPLELPPFTLVGATTRAGLLPPPLRDRFGFTAHMEFYAPTELERVVHRSAGLLDVAIDTDGAAEIAGRSRGTPRIANR
LLRRVRDYAQVKAEGRIDREIAAAALRVYEVDERGLDRLDRGVLEALLKLFGGGPVGLSTLAVAVGEERETVEEVAEPFL
VREGLLARTPRGRVATPAAWAHLGLVPPQHAAKGQQGLFGA

Nucleotide


Download         Length: 1086 bp        

>NTDB_id=34292 SACTE_RS04475 WP_014044840.1 1054474..1055559(-) (ruvB) [Streptomyces sp. SirexAA-E]
ATGAACTGGGACGAGACCGGGCCCGACACCGGCGAGCTGACCGACGAGCGGTTCCACGACCGCCTGGTCGACGGTGGGGC
CGACGGCGAGGACACCGCGGTCGAGGCCGCCCTGCGCCCGAAGGACCTGGGCGAATTCATCGGCCAGGAGAAGGTCCGCG
AACAGCTCGACCTGGTCCTCAAGGCCGCCCTGGCCCGCGGCGCCACCGCCGACCACGTCCTGCTCTCCGGCGCCCCCGGC
CTCGGCAAGACCACCCTCTCCATGATCATCGCCGCCGAGATGAACGCCCCGATCAGGATCACCTCCGGCCCCGCCATCCA
GCACGCCGGAGACCTCGCGGCGATCCTCTCCTCCCTCCAGGAGGGCGAGGTGCTCTTCCTGGACGAGATCCACCGCATGT
CCCGGCCCGCCGAGGAGATGCTCTACATGGCGATGGAGGACTTCCGGGTCGACGTCATCGTCGGCAAGGGCCCCGGCGCG
ACCGCCATCCCGCTGGAACTCCCGCCGTTCACCCTCGTCGGCGCCACCACCAGGGCCGGACTGCTGCCGCCCCCGCTGCG
CGACCGGTTCGGTTTCACCGCCCACATGGAGTTCTACGCCCCCACCGAACTGGAACGGGTGGTCCATCGCTCGGCCGGCC
TCCTCGACGTGGCCATAGACACCGACGGCGCCGCCGAGATCGCCGGACGCTCCCGCGGCACGCCCCGCATCGCCAACCGG
CTGCTGCGCCGCGTCCGCGACTACGCCCAGGTCAAGGCCGAGGGCCGGATCGACCGGGAGATCGCGGCCGCCGCCCTGCG
GGTCTACGAGGTCGACGAACGGGGCCTGGACCGGCTGGACCGGGGGGTGCTCGAAGCCCTGCTGAAGCTCTTCGGCGGCG
GCCCCGTCGGCCTGTCCACCCTCGCGGTCGCGGTGGGGGAGGAGCGCGAGACGGTCGAGGAGGTCGCCGAGCCCTTCCTC
GTACGGGAAGGCCTGCTGGCCAGGACGCCGCGCGGCCGGGTCGCCACCCCCGCCGCCTGGGCCCACCTGGGGCTCGTACC
GCCGCAGCACGCCGCAAAGGGACAACAGGGCCTGTTCGGGGCGTGA

Domains

Predicted by InterProScan.

RuvB C-terminal winged helix domain (WHD_RuvB)

(273-343)

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(38-196)

RuvB AAA lid domain (AAA_lid_4)

(199-272)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvB Bacillus subtilis subsp. subtilis str. 168

53.474

91.69

0.49
  ruvB Streptococcus pneumoniae TIGR4

52.469

89.751

0.471
  ruvB Streptococcus pneumoniae R6

52.469

89.751

0.471
  ruvB Streptococcus pneumoniae D39

52.469

89.751

0.471
  ruvB Synechocystis sp. PCC 6803

53.822

86.981

0.468
  ruvB Helicobacter pylori 26695

50

88.643

0.443