Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   FSA40_RS02410 Genome accession   NZ_CP044493
Coordinates   453366..454031 (+) Length   221 a.a.
NCBI ID   WP_002270131.1    Uniprot ID   -
Organism   Streptococcus mutans strain MD     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 448366..459031
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FSA40_RS02390 (FSA40_0470) - 448927..450018 (+) 1092 WP_002280717.1 glycerol dehydrogenase -
  FSA40_RS02395 (FSA40_0471) cysK 450349..451275 (-) 927 WP_002269524.1 cysteine synthase A -
  FSA40_RS02400 (FSA40_0472) - 451366..451995 (-) 630 WP_002267042.1 YigZ family protein -
  FSA40_RS02405 (FSA40_0473) comFA/cflA 452068..453369 (+) 1302 WP_002266344.1 DEAD/DEAH box helicase Machinery gene
  FSA40_RS02410 (FSA40_0474) comFC/cflB 453366..454031 (+) 666 WP_002270131.1 ComF family protein Machinery gene
  FSA40_RS02415 (FSA40_0475) raiA 454110..454658 (+) 549 WP_002263024.1 ribosome-associated translation inhibitor RaiA -
  FSA40_RS02420 (FSA40_0476) - 454782..455876 (+) 1095 WP_002273626.1 hypothetical protein -
  FSA40_RS02425 (FSA40_0477) - 455896..457596 (+) 1701 WP_151416196.1 zinc ribbon domain-containing protein -
  FSA40_RS02430 (FSA40_0478) - 457676..458311 (-) 636 WP_002263021.1 hypothetical protein -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 26031.08 Da        Isoelectric Point: 8.9825

>NTDB_id=342882 FSA40_RS02410 WP_002270131.1 453366..454031(+) (comFC/cflB) [Streptococcus mutans strain MD]
MNCLICHLPFESKYYFYSIFFLKTSRDFVCPPCFAKFQFISEKHCLNCYKEGEGDICQDCHKWQNLKKEVHHKALFCYNQ
AMKDYFSAYKFQGDYLLRKVFIKPIKEALREYTNYTLVPIPLSSSSLENRGFNQVQAFLDEAKLSYHDLLGKEDGSVKQS
SKTRQERLKTQQNFYLRKHKELPDKVMLVDDIYTTGMTIQLASQLLRENGVKTIKSFSLAR

Nucleotide


Download         Length: 666 bp        

>NTDB_id=342882 FSA40_RS02410 WP_002270131.1 453366..454031(+) (comFC/cflB) [Streptococcus mutans strain MD]
ATGAACTGTCTCATTTGTCACTTGCCTTTTGAGAGTAAATATTATTTCTATTCTATTTTCTTCTTGAAAACTTCAAGAGA
TTTTGTTTGCCCACCTTGCTTTGCGAAATTTCAATTCATATCTGAAAAACATTGCCTAAATTGTTATAAGGAGGGAGAAG
GAGATATCTGTCAAGATTGCCACAAATGGCAAAATCTCAAAAAGGAGGTTCATCACAAGGCTCTCTTTTGTTACAATCAA
GCTATGAAAGATTATTTCAGTGCTTACAAATTTCAAGGGGATTATCTTTTAAGAAAGGTCTTTATAAAGCCTATTAAAGA
AGCCTTAAGAGAGTATACTAATTATACTTTGGTTCCCATTCCACTCAGCTCTTCAAGTTTAGAGAATCGTGGTTTTAATC
AAGTGCAAGCTTTTTTAGATGAGGCAAAATTGTCTTATCATGATTTATTAGGCAAAGAAGATGGTAGTGTAAAACAATCA
AGTAAAACACGTCAAGAACGCCTAAAGACTCAACAAAACTTTTATTTAAGGAAACATAAAGAATTACCTGATAAAGTGAT
GCTAGTTGATGATATCTATACAACGGGTATGACAATTCAATTGGCCAGTCAATTATTGCGTGAAAATGGTGTGAAAACAA
TAAAATCCTTTTCTTTAGCAAGGTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus pneumoniae TIGR4

44.796

100

0.448
  comFC/cflB Streptococcus mitis NCTC 12261

44.796

100

0.448
  comFC/cflB Streptococcus pneumoniae Rx1

44.344

100

0.443
  comFC/cflB Streptococcus pneumoniae D39

44.344

100

0.443
  comFC/cflB Streptococcus pneumoniae R6

44.344

100

0.443
  comFC/cflB Streptococcus mitis SK321

43.891

100

0.439