Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   EUZ85_RS29270 Genome accession   NZ_CP035490
Coordinates   6620491..6621123 (-) Length   210 a.a.
NCBI ID   WP_127973644.1    Uniprot ID   A0AAE6CK31
Organism   Hahella sp. KA22     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 6615491..6626123
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EUZ85_RS29245 (EUZ85_29245) - 6616085..6616741 (+) 657 WP_127973639.1 hypothetical protein -
  EUZ85_RS29250 (EUZ85_29250) - 6616784..6617860 (-) 1077 WP_164887392.1 beta-galactosidase -
  EUZ85_RS29255 (EUZ85_29255) - 6618340..6618786 (+) 447 WP_127973641.1 hypothetical protein -
  EUZ85_RS29260 (EUZ85_29260) - 6618850..6619215 (-) 366 WP_127973642.1 hypothetical protein -
  EUZ85_RS29265 (EUZ85_29265) - 6619385..6620380 (-) 996 WP_127973643.1 D-alanine--D-alanine ligase -
  EUZ85_RS29270 (EUZ85_29270) ssb 6620491..6621123 (-) 633 WP_127973644.1 single-stranded DNA-binding protein Machinery gene
  EUZ85_RS29275 (EUZ85_29275) - 6621139..6622521 (-) 1383 WP_127973645.1 MFS transporter -
  EUZ85_RS29280 (EUZ85_29280) uvrA 6622666..6625491 (+) 2826 WP_127973646.1 excinuclease ABC subunit UvrA -
  EUZ85_RS29285 (EUZ85_29285) rplQ 6625613..6626002 (-) 390 WP_011399894.1 50S ribosomal protein L17 -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 22655.74 Da        Isoelectric Point: 4.9740

>NTDB_id=342788 EUZ85_RS29270 WP_127973644.1 6620491..6621123(-) (ssb) [Hahella sp. KA22]
MARGVNKVILIGNLGSDPETRYTPSGSAISNLRLATDESYKDKQTGQLVPRTEWHRVVLFGKLAEIAAQYLRKGSKVYIE
GRLQTRKWQDQSGQDRYSTEIVVDMQGQMQMLDSRSGGGGMDNSQGYNDGWQQSAPSGDSYGGAPAAAPAGNYGGAPSNN
NYGGASNNNYGASSGGYSAPNQGQQRPQQPQQPKPPMPEPMDDFDDDIPF

Nucleotide


Download         Length: 633 bp        

>NTDB_id=342788 EUZ85_RS29270 WP_127973644.1 6620491..6621123(-) (ssb) [Hahella sp. KA22]
ATGGCGCGTGGTGTAAATAAAGTAATTCTAATTGGTAATTTGGGTAGCGATCCGGAAACACGTTATACCCCCTCCGGCAG
CGCGATTTCCAACCTGAGGTTGGCGACTGACGAGAGCTATAAAGACAAGCAGACGGGACAACTGGTGCCTCGTACAGAAT
GGCACCGGGTTGTGCTGTTCGGCAAGCTGGCGGAGATTGCCGCTCAGTACCTGAGAAAAGGCTCCAAAGTATATATTGAA
GGTCGTCTGCAAACGCGCAAATGGCAGGACCAGTCTGGACAGGATCGTTACAGCACAGAGATTGTTGTCGACATGCAAGG
TCAGATGCAGATGCTCGACAGCCGCAGTGGCGGCGGTGGTATGGATAACTCGCAAGGTTACAACGACGGTTGGCAGCAAT
CCGCTCCTTCCGGCGATAGCTACGGCGGCGCTCCAGCCGCTGCGCCTGCCGGTAACTATGGCGGCGCTCCCTCCAACAAC
AATTATGGCGGCGCTTCCAATAACAACTATGGCGCCTCAAGCGGCGGCTATTCCGCTCCGAACCAGGGGCAACAACGCCC
ACAACAGCCTCAGCAACCAAAGCCGCCCATGCCAGAGCCTATGGACGACTTTGACGACGATATTCCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

51.905

100

0.519
  ssb Glaesserella parasuis strain SC1401

51.208

98.571

0.505
  ssb Neisseria gonorrhoeae MS11

39.437

100

0.4
  ssb Neisseria meningitidis MC58

40.777

98.095

0.4

Multiple sequence alignment