Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   FSA31_RS02870 Genome accession   NZ_CP044492
Coordinates   575588..576187 (+) Length   199 a.a.
NCBI ID   WP_002263250.1    Uniprot ID   Q8DV99
Organism   Streptococcus mutans strain T8     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 570588..581187
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FSA31_RS02845 (FSA31_0563) - 570652..571128 (+) 477 WP_002284844.1 Fur family transcriptional regulator -
  FSA31_RS02850 (FSA31_0564) - 571191..571346 (+) 156 WP_002263254.1 hypothetical protein -
  FSA31_RS02855 (FSA31_0565) - 571409..572344 (-) 936 WP_002284845.1 dihydroorotate oxidase -
  FSA31_RS02860 (FSA31_0566) - 572562..573254 (+) 693 WP_002263252.1 phosphoglycerate mutase -
  FSA31_RS02865 (FSA31_0567) pbp2b 573500..575578 (+) 2079 WP_002263251.1 penicillin-binding protein PBP2B -
  FSA31_RS02870 (FSA31_0568) recR 575588..576187 (+) 600 WP_002263250.1 recombination mediator RecR Machinery gene
  FSA31_RS02875 (FSA31_0570) - 576399..577448 (+) 1050 WP_002265801.1 D-alanine--D-alanine ligase -
  FSA31_RS02880 (FSA31_0571) - 577620..578180 (-) 561 WP_002265800.1 folate family ECF transporter S component -
  FSA31_RS02885 (FSA31_0572) - 578533..579483 (+) 951 WP_002284846.1 bile acid:sodium symporter family protein -
  FSA31_RS02890 (FSA31_0573) murF 579561..580919 (+) 1359 WP_002284847.1 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21818.89 Da        Isoelectric Point: 4.6800

>NTDB_id=342773 FSA31_RS02870 WP_002263250.1 575588..576187(+) (recR) [Streptococcus mutans strain T8]
MLYPTPIAKLIESFTKLPGIGIKTATRLAFYTIGMSDEDVNNFAKNLLAAKRELTYCSVCGNLTDDDPCNICTDESRDRS
TVLVVEDSKDVSAMEKIQEYHGLYHVLHGLISPMNGIGPDDINLKSLLTRLRDNSDIHEVIIATNATADGEATAMYISRV
LKPAGITVTRLARGLAVGSDIEYADEVTLLRAIENRTEL

Nucleotide


Download         Length: 600 bp        

>NTDB_id=342773 FSA31_RS02870 WP_002263250.1 575588..576187(+) (recR) [Streptococcus mutans strain T8]
ATGCTCTACCCAACGCCTATTGCCAAACTTATTGAGAGTTTCACAAAATTACCGGGTATTGGTATCAAAACAGCGACTCG
CTTAGCTTTTTATACGATTGGTATGAGTGATGAAGACGTTAATAACTTTGCTAAAAATCTTCTAGCTGCTAAACGAGAAT
TGACCTACTGTTCTGTTTGTGGCAATCTGACAGATGATGATCCTTGCAATATTTGTACAGATGAAAGCAGAGACCGCTCG
ACTGTTTTAGTAGTTGAAGATAGTAAGGATGTTTCTGCAATGGAAAAAATTCAGGAATATCATGGTCTTTATCATGTTTT
ACACGGCCTGATTTCTCCTATGAATGGTATTGGTCCTGATGATATTAATTTGAAAAGTCTTCTGACACGCCTACGTGATA
ATAGTGATATTCATGAAGTCATTATCGCAACTAATGCCACAGCAGATGGAGAAGCAACGGCTATGTATATTTCCAGAGTT
CTCAAACCTGCTGGTATTACAGTTACACGTTTAGCGCGTGGGCTTGCTGTTGGTTCTGACATTGAGTATGCTGATGAAGT
AACTCTGCTTCGAGCAATTGAAAATAGGACAGAGTTATAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(39-78)

Toprim domain (Toprim_4)

(80-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8DV99

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Streptococcus pneumoniae R6

83.92

100

0.839
  recR Bacillus subtilis subsp. subtilis str. 168

63.819

100

0.638
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

48.98

98.492

0.482

Multiple sequence alignment