Detailed information NTG0342644

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: EQU24_RS04205
• Genome accession: NZ_CP035467
• Coordinates: 881274..882611 (-)
• Length: 445 a.a.
• NCBI ID: WP_017840699.1
• Uniprot ID: A0A4P9UJZ4
• Organism: Methylotuvimicrobium buryatense strain 5GB1C
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 876274..887611

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EQU24_RS04185 (EQU24_04185)	pepP	876498..877808 (+)	1311	WP_138767075.1	Xaa-Pro aminopeptidase	-
EQU24_RS04190 (EQU24_04190)	ubiH	877808..879019 (+)	1212	WP_017840703.1	2-octaprenyl-6-methoxyphenyl hydroxylase	-
EQU24_RS04195 (EQU24_04195)	-	879025..880245 (+)	1221	WP_017840702.1	UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase	-
EQU24_RS04200 (EQU24_04200)	-	880574..881023 (+)	450	WP_017840700.1	hypothetical protein	-
EQU24_RS04205 (EQU24_04205)	pilR	881274..882611 (-)	1338	WP_017840699.1	sigma-54 dependent transcriptional regulator	Regulator
EQU24_RS04210 (EQU24_04210)	-	882608..884239 (-)	1632	WP_017840698.1	HAMP domain-containing sensor histidine kinase	-
EQU24_RS04215 (EQU24_04215)	sucC	884785..885951 (+)	1167	WP_017840697.1	ADP-forming succinate--CoA ligase subunit beta	-
EQU24_RS04220 (EQU24_04220)	sucD	885948..886817 (+)	870	WP_017840696.1	succinate--CoA ligase subunit alpha	-

Sequence

Protein

• Length: 445 a.a.
• Molecular weight: 49431.70 Da
• Isoelectric Point: 6.4286

>NTDB_id=342644 EQU24_RS04205 WP_017840699.1 881274..882611(-) (pilR) [Methylotuvimicrobium buryatense strain 5GB1C]
MKHPLTLVVDDEPDIRELLSITLKRMNIDTLCAENVSSARRLLQQHPFDLCLTDMKLPDGNGLELVEYLQSTGSTIPIAV
ITAHGNMDTAIKAMKAGAFDFISKPVDLPVLRQIVTKALQLAPDADTKERRTRHILLGESEPMRQVRSKIDKLARSQAPV
YISGESGSGKELVARLIHQQSPRSDKPFVAVNCGAIPPELMESEFFGHKKGSFSGAIADKKGLFQAAEGGTLFLDEVADL
PPSLQVKLLRAIQEKKVRAVGEQHETPVDVRILSATHKDLNQLVQEGVFRQDLYYRINVIDLNIPPLRERGADIAQLAEH
ILASLNSNNFYRVQLSESALTALKRYRFPGNVRELENILERAVALSDGKTIDADDLNLPINPEIVPDAPAFDPSKASLED
YLEDIERTAITIALENNRWNKTAAAKELGLSFRSLRYRLKKLGLD

Nucleotide

• Length: 1338 bp

>NTDB_id=342644 EQU24_RS04205 WP_017840699.1 881274..882611(-) (pilR) [Methylotuvimicrobium buryatense strain 5GB1C]
ATGAAACACCCCCTGACTTTAGTCGTCGACGACGAGCCGGATATCCGAGAGCTGTTAAGCATTACGCTCAAACGCATGAA
CATCGATACCTTGTGCGCGGAAAATGTCAGCTCGGCTCGCCGGTTGTTGCAACAACATCCGTTCGATCTTTGCCTGACCG
ACATGAAGCTACCCGACGGCAACGGGCTCGAATTGGTCGAATACCTTCAAAGCACGGGTAGCACGATTCCGATTGCCGTA
ATTACCGCACACGGCAACATGGACACTGCGATCAAGGCAATGAAAGCCGGGGCCTTCGACTTTATCTCAAAACCGGTCGA
TTTACCGGTACTTCGGCAAATCGTCACGAAAGCCTTACAATTAGCCCCCGATGCCGATACCAAGGAAAGGCGCACACGAC
ATATTTTATTGGGCGAATCGGAGCCGATGCGCCAAGTCAGGTCTAAAATCGACAAGCTGGCGCGTAGCCAGGCGCCGGTC
TATATCAGCGGCGAATCGGGGTCGGGTAAGGAATTGGTGGCGCGCTTGATTCATCAACAAAGCCCGCGTAGCGACAAGCC
TTTTGTTGCCGTAAACTGCGGCGCAATCCCGCCCGAACTTATGGAAAGCGAGTTTTTCGGACATAAAAAAGGCAGTTTCA
GCGGTGCAATTGCCGATAAAAAAGGTTTATTTCAAGCAGCCGAGGGCGGTACGCTATTTCTCGATGAAGTCGCCGATCTG
CCTCCTTCGCTGCAAGTCAAATTACTCCGCGCGATTCAGGAAAAAAAAGTACGCGCAGTCGGCGAACAACACGAAACGCC
GGTCGATGTCCGCATCCTGAGCGCCACGCATAAAGATTTGAATCAATTGGTTCAGGAAGGGGTTTTTCGGCAAGATTTAT
ACTACCGGATCAATGTCATCGATCTCAATATTCCGCCGCTTCGCGAACGAGGCGCTGATATCGCGCAACTGGCCGAACAC
ATTTTGGCTTCGCTCAATAGTAACAACTTTTACCGAGTTCAGCTTTCGGAATCAGCACTGACCGCATTGAAAAGGTATCG
TTTCCCGGGCAATGTTAGGGAACTCGAGAATATTCTGGAACGCGCCGTTGCGCTCAGCGACGGCAAAACGATCGATGCGG
ACGATTTAAATCTGCCGATTAATCCGGAAATCGTCCCTGATGCGCCAGCGTTCGATCCGTCAAAAGCGTCGTTGGAAGAT
TATTTGGAAGATATCGAGCGAACCGCTATTACCATCGCACTCGAAAATAACCGATGGAATAAAACCGCAGCAGCAAAAGA
GCTGGGGTTATCGTTCCGATCATTGCGTTACCGGTTAAAAAAACTGGGCTTGGACTAG

Domains

Predicted by InterproScan.

• Bacterial regulatory protein, Fis family (HTH_8) (402-442)

• Response regulator receiver domain (Response_reg) (7-115)

• Sigma-54 interaction domain (Sigma54_activat) (136-302)

3D structure

• AlphaFold DB: A0A4P9UJZ4

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	64.126	100	0.643
pilR	Acinetobacter baumannii strain A118	51.931	100	0.544
luxO	Vibrio cholerae strain A1552	38.876	100	0.389