Detailed information    

insolico Bioinformatically predicted

Overview

Name   cclA/cilC   Type   Machinery gene
Locus tag   SALIVB_RS10610 Genome accession   NC_015760
Coordinates   1413494..1414150 (+) Length   218 a.a.
NCBI ID   WP_013990792.1    Uniprot ID   -
Organism   Streptococcus salivarius CCHSS3     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1408494..1419150
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SALIVB_RS06290 (SALIVB_1303) - 1408784..1409053 (-) 270 WP_002884134.1 DUF3165 family protein -
  SALIVB_RS06295 (SALIVB_1304) typA 1409073..1410923 (-) 1851 WP_002884130.1 translational GTPase TypA -
  SALIVB_RS06300 (SALIVB_1305) - 1411068..1412036 (-) 969 WP_013990790.1 ROK family glucokinase -
  SALIVB_RS06305 (SALIVB_1306) - 1412029..1412235 (-) 207 WP_004182729.1 YqgQ family protein -
  SALIVB_RS06310 (SALIVB_1307) - 1412322..1412774 (-) 453 WP_004182730.1 Fur family transcriptional regulator -
  SALIVB_RS06315 (SALIVB_1308) - 1412863..1413384 (-) 522 WP_013990791.1 Dps family protein -
  SALIVB_RS10610 (SALIVB_1309) cclA/cilC 1413494..1414150 (+) 657 WP_013990792.1 prepilin peptidase Machinery gene
  SALIVB_RS06320 (SALIVB_1310) - 1414182..1415540 (-) 1359 WP_013990793.1 serine hydrolase -
  SALIVB_RS06325 (SALIVB_1311) sodA 1415638..1416243 (-) 606 WP_004182735.1 superoxide dismutase SodA -
  SALIVB_RS06330 (SALIVB_1312) holA 1416339..1417373 (-) 1035 WP_013990794.1 DNA polymerase III subunit delta -

Sequence

Protein


Download         Length: 218 a.a.        Molecular weight: 25223.61 Da        Isoelectric Point: 8.3213

>NTDB_id=34264 SALIVB_RS10610 WP_013990792.1 1413494..1414150(+) (cclA/cilC) [Streptococcus salivarius CCHSS3]
MLTIIYFFLGASLGSFIGLICDRFPEKSIIFPSSHCSHCKHQLRFFEMIPILSQLFLRSRCRSCQTSIPLRYLFMELFCG
VICLLYFYDFLSLEVTYFLYFSLCLSIFDLKHKSYPLLIWIVGTLPLLFMGNHYLTFILGLILAIISYIKRLNIGEGDFL
YLASASLIFPLSKTLLIIEIACLLGLAYFLLRRNLKEYIAFVPFLFLGIVLLTFCSIV

Nucleotide


Download         Length: 657 bp        

>NTDB_id=34264 SALIVB_RS10610 WP_013990792.1 1413494..1414150(+) (cclA/cilC) [Streptococcus salivarius CCHSS3]
ATGTTAACTATCATTTATTTTTTTCTGGGAGCCTCTTTAGGTTCATTTATCGGACTGATTTGTGATCGTTTCCCTGAGAA
GTCGATTATTTTTCCTAGTAGTCACTGTAGTCATTGCAAGCATCAGTTGCGTTTTTTCGAGATGATCCCTATCCTCTCAC
AACTTTTCTTAAGATCTCGATGTCGATCATGTCAGACTTCTATCCCTCTTCGTTACCTCTTTATGGAACTATTTTGTGGA
GTAATATGCCTGCTATATTTCTATGACTTTTTGAGTCTTGAAGTAACCTACTTTCTTTACTTCAGCCTTTGTTTATCAAT
TTTTGATTTGAAGCATAAATCCTATCCGCTTCTGATTTGGATAGTTGGAACACTCCCGCTCCTATTCATGGGAAACCACT
ATCTCACTTTTATCTTAGGACTCATATTAGCAATTATATCCTATATTAAACGTTTAAACATTGGAGAAGGCGATTTTCTC
TACTTAGCTAGTGCCTCACTTATTTTCCCACTTTCAAAAACACTACTAATTATTGAAATTGCCTGCCTATTAGGACTAGC
TTACTTCCTTCTACGAAGAAATCTCAAGGAATACATCGCATTTGTTCCATTTCTTTTTCTCGGGATAGTACTCCTTACTT
TTTGTTCAATTGTATAG

Domains

Predicted by InterProScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(9-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cclA/cilC Streptococcus pneumoniae TIGR4

41.589

98.165

0.408
  cclA/cilC Streptococcus mitis SK321

41.121

98.165

0.404
  cclA/cilC Streptococcus mitis NCTC 12261

41.121

98.165

0.404
  cclA/cilC Streptococcus pneumoniae Rx1

40.654

98.165

0.399
  cclA/cilC Streptococcus pneumoniae D39

40.654

98.165

0.399
  cclA/cilC Streptococcus pneumoniae R6

40.654

98.165

0.399

Multiple sequence alignment