Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvB   Type   Machinery gene
Locus tag   SALIVB_RS09885 Genome accession   NC_015760
Coordinates   2131253..2132254 (-) Length   333 a.a.
NCBI ID   WP_002892095.1    Uniprot ID   J7TG92
Organism   Streptococcus salivarius CCHSS3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2126253..2137254
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SALIVB_RS09840 (SALIVB_2054) rplP 2126349..2126762 (-) 414 WP_000960950.1 50S ribosomal protein L16 -
  SALIVB_RS09845 (SALIVB_2055) rpsC 2126766..2127419 (-) 654 WP_002885727.1 30S ribosomal protein S3 -
  SALIVB_RS09850 (SALIVB_2056) rplV 2127432..2127776 (-) 345 WP_002887063.1 50S ribosomal protein L22 -
  SALIVB_RS09855 (SALIVB_2057) rpsS 2127792..2128070 (-) 279 WP_000533765.1 30S ribosomal protein S19 -
  SALIVB_RS09860 (SALIVB_2058) rplB 2128164..2128997 (-) 834 WP_002887065.1 50S ribosomal protein L2 -
  SALIVB_RS09865 (SALIVB_2059) - 2129015..2129311 (-) 297 WP_002887066.1 50S ribosomal protein L23 -
  SALIVB_RS09870 (SALIVB_2060) rplD 2129311..2129934 (-) 624 WP_002885795.1 50S ribosomal protein L4 -
  SALIVB_RS09875 (SALIVB_2061) rplC 2129959..2130585 (-) 627 WP_002885755.1 50S ribosomal protein L3 -
  SALIVB_RS09880 (SALIVB_2062) rpsJ 2130700..2131008 (-) 309 WP_002885653.1 30S ribosomal protein S10 -
  SALIVB_RS09885 (SALIVB_2063) ruvB 2131253..2132254 (-) 1002 WP_002892095.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  SALIVB_RS09890 (SALIVB_2064) - 2132335..2134158 (-) 1824 WP_013991288.1 acyltransferase family protein -
  SALIVB_RS09895 (SALIVB_2065) - 2134155..2134565 (-) 411 WP_002885750.1 membrane protein -
  SALIVB_RS09900 (SALIVB_2066) - 2134562..2134996 (-) 435 WP_013991289.1 low molecular weight protein-tyrosine-phosphatase -
  SALIVB_RS09905 (SALIVB_2067) - 2135272..2136564 (-) 1293 WP_002887072.1 adenylosuccinate synthase -

Sequence

Protein


Download         Length: 333 a.a.        Molecular weight: 37583.13 Da        Isoelectric Point: 4.5460

>NTDB_id=34259 SALIVB_RS09885 WP_002892095.1 2131253..2132254(-) (ruvB) [Streptococcus salivarius CCHSS3]
MARILDNDLLGDEEYVERTLRPQYFKEYIGQDKVKDQLKIFIEAAKLRDEALDHTLLFGPPGLGKTTMAFVIANEMGVNL
KQTSGPAIEKAGDLVAILNDLEPGDILFIDEIHRMPMAVEEVLYSAMEDYYIDIMIGAGETSRSVHLELPPFTLVGATTR
AGMLSNPLRARFGINGHMEYYELPDLKEIIERTSEIFDMTITPEAALELARRSRGTPRIANRLLKRVRDYAQIMGDGIID
DKIADKALTMLDVDHEGLDYVDQKILRTMIEMYGGGPVGLGTLSVNIAEERETVEDMYEPYLIQKGFIMRTRTGRVATVK
AYEHMGYDYTKES

Nucleotide


Download         Length: 1002 bp        

>NTDB_id=34259 SALIVB_RS09885 WP_002892095.1 2131253..2132254(-) (ruvB) [Streptococcus salivarius CCHSS3]
ATGGCAAGAATATTAGATAATGATTTACTAGGAGATGAAGAGTATGTTGAGCGTACCCTTCGTCCTCAGTACTTTAAGGA
ATATATTGGTCAAGATAAGGTTAAGGACCAATTAAAGATTTTTATAGAGGCAGCTAAACTTCGTGATGAAGCATTGGATC
ATACTCTTTTGTTTGGTCCTCCAGGTTTAGGGAAAACGACCATGGCTTTTGTGATAGCTAATGAGATGGGCGTCAATTTA
AAGCAGACGTCTGGGCCAGCAATTGAGAAGGCTGGAGATCTGGTTGCCATACTAAATGACTTGGAGCCAGGTGATATCTT
ATTTATTGATGAGATTCATCGAATGCCTATGGCAGTGGAAGAAGTACTTTATAGTGCTATGGAAGATTACTACATCGATA
TCATGATTGGTGCAGGTGAAACAAGTCGTAGTGTTCATCTAGAGTTACCACCGTTCACTTTAGTGGGTGCAACTACACGA
GCAGGTATGTTGTCAAATCCATTGAGGGCTCGTTTTGGGATTAATGGTCATATGGAATATTATGAGTTACCAGATTTGAA
GGAAATTATAGAACGCACTTCAGAAATCTTTGATATGACTATAACACCTGAGGCTGCCCTAGAGTTAGCACGTCGTAGTC
GTGGAACGCCACGTATTGCTAACCGCCTACTTAAGCGTGTGAGAGACTATGCACAAATTATGGGTGATGGAATCATTGAT
GATAAGATTGCAGACAAGGCGTTGACTATGTTGGATGTGGATCATGAAGGACTAGATTATGTCGACCAAAAAATTCTCCG
AACCATGATTGAGATGTATGGTGGTGGACCGGTTGGACTAGGGACCTTGTCAGTTAATATTGCTGAAGAGCGAGAAACGG
TAGAAGATATGTATGAACCCTATCTAATTCAAAAAGGATTTATTATGCGAACACGAACAGGACGTGTTGCAACGGTTAAA
GCCTATGAACACATGGGGTACGACTACACTAAAGAAAGTTGA

Domains

Predicted by InterProScan.

RuvB AAA lid domain (AAA_lid_4)

(181-254)

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(20-178)

RuvB C-terminal winged helix domain (WHD_RuvB)

(256-325)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB J7TG92

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvB Streptococcus pneumoniae TIGR4

86.747

99.7

0.865
  ruvB Streptococcus pneumoniae R6

86.446

99.7

0.862
  ruvB Streptococcus pneumoniae D39

86.446

99.7

0.862
  ruvB Bacillus subtilis subsp. subtilis str. 168

58.204

96.997

0.565
  ruvB Synechocystis sp. PCC 6803

51.118

93.994

0.48
  ruvB Helicobacter pylori 26695

49.844

96.396

0.48

Multiple sequence alignment