Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiC   Type   Regulator
Locus tag   ETT49_RS01370 Genome accession   NZ_CP035450
Coordinates   249852..251354 (+) Length   500 a.a.
NCBI ID   WP_011017334.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain emm93.4     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 244852..256354
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ETT49_RS01355 (ETT49_01355) - 244896..246077 (-) 1182 WP_136269442.1 D-alanyl-D-alanine carboxypeptidase family protein -
  ETT49_RS01360 (ETT49_01360) pbp3 246245..247477 (-) 1233 WP_002991111.1 D-alanyl-D-alanine carboxypeptidase PBP3 -
  ETT49_RS01365 (ETT49_01365) amiA 247808..249787 (+) 1980 WP_136269440.1 peptide ABC transporter substrate-binding protein Regulator
  ETT49_RS01370 (ETT49_01370) amiC 249852..251354 (+) 1503 WP_011017334.1 ABC transporter permease Regulator
  ETT49_RS01375 (ETT49_01375) amiD 251354..252280 (+) 927 WP_002986004.1 oligopeptide ABC transporter permease OppC Regulator
  ETT49_RS01380 (ETT49_01380) amiE 252289..253359 (+) 1071 WP_023612409.1 ABC transporter ATP-binding protein Regulator
  ETT49_RS01385 (ETT49_01385) amiF 253352..254275 (+) 924 WP_109828499.1 ABC transporter ATP-binding protein Regulator
  ETT49_RS08810 (ETT49_01390) - 254313..254396 (-) 84 Protein_224 IS3 family transposase -

Sequence

Protein


Download         Length: 500 a.a.        Molecular weight: 56149.52 Da        Isoelectric Point: 10.2222

>NTDB_id=342228 ETT49_RS01370 WP_011017334.1 249852..251354(+) (amiC) [Streptococcus pyogenes strain emm93.4]
MKKYILNRIMRSLVSVVLVTALTYTIVYTLVPTSLIFKQDPNYNKMTTTPDKKVAYENLTFQRMGYVNYFSSKELKDNAS
KVDSSVTTEATSANKAIYEKYIDSLGNGWQLKRFPTSKQFYAIRNIPIYERVWNFFSNLVVIDHPWKIQDKDNPKLARYI
RLEKDKSVGWSLVGSGTKHKYLLYTNGKFPYLHQNFVTLNLGTSYPTYSNIPVLQVISQGQGRTALQDVTFPSGVTKKSS
VDIYSRSYKNPKSLDDITKVNYGKGDSYTKTINNYVDPSMIHNSFVIGFFGVMFSYIVGLPLGLFMARFKNTYFDRFSTA
TMTFMLALPSIAVIYVVRFLGGMVGLPDSFPMLGASDPKSYILPALILGILNIPTTVIWFRRYLVDLQASDWVRFARSKG
LSESEIYRGHLFKNAMVPIVSGVPASIILAIGGATLTETVFAFPGMGKMLIDSIKSANNSMIVGLTFIFTVLSIVSLLLG
DIVMTLVDPRIKLSTKKGGK

Nucleotide


Download         Length: 1503 bp        

>NTDB_id=342228 ETT49_RS01370 WP_011017334.1 249852..251354(+) (amiC) [Streptococcus pyogenes strain emm93.4]
ATGAAAAAATACATTTTAAACCGTATCATGCGATCGTTAGTGTCGGTAGTTTTGGTAACGGCTTTAACATACACCATCGT
ATATACTCTAGTACCTACCAGCCTTATCTTTAAACAAGACCCTAATTATAATAAAATGACAACAACACCAGATAAAAAAG
TAGCATATGAAAATCTAACTTTTCAACGTATGGGTTATGTCAATTATTTTTCAAGCAAAGAATTAAAAGATAATGCTTCT
AAAGTAGATAGTAGTGTAACGACAGAAGCAACTAGTGCTAACAAAGCTATCTATGAGAAGTATATTGATTCTCTTGGCAA
TGGCTGGCAGCTAAAACGCTTCCCCACTAGCAAACAGTTTTATGCAATTCGCAATATTCCTATTTACGAACGTGTTTGGA
ACTTTTTCTCAAATCTAGTTGTTATTGATCACCCTTGGAAGATTCAGGATAAAGATAATCCAAAATTAGCTAGGTATATT
CGTCTAGAAAAAGATAAATCAGTTGGCTGGTCACTTGTTGGTTCGGGGACAAAACATAAATATCTCCTCTATACTAACGG
AAAATTTCCTTATCTTCACCAAAACTTTGTTACCCTAAACTTAGGAACATCTTACCCAACATACAGCAATATTCCTGTTC
TTCAGGTTATTTCACAAGGGCAAGGACGAACAGCTCTTCAAGATGTGACCTTCCCATCAGGTGTCACTAAGAAATCGTCA
GTGGATATCTATAGCCGTAGCTACAAAAATCCAAAATCATTGGATGATATCACCAAGGTAAATTATGGTAAGGGAGATTC
CTACACTAAAACCATCAATAATTATGTCGACCCATCAATGATTCACAATTCTTTTGTAATTGGTTTTTTTGGTGTTATGT
TTTCCTATATCGTTGGTTTGCCTCTTGGTTTATTTATGGCTCGGTTTAAAAATACCTATTTTGACCGTTTCTCAACAGCG
ACCATGACCTTCATGCTTGCTTTACCAAGTATTGCTGTTATCTATGTTGTTCGCTTCCTAGGTGGCATGGTTGGTTTACC
AGATAGTTTCCCAATGCTGGGGGCATCTGATCCTAAATCTTATATTTTACCAGCCCTTATTTTAGGAATTTTAAATATTC
CAACTACGGTTATCTGGTTCCGTCGCTATCTTGTTGACCTTCAGGCCAGCGATTGGGTACGTTTTGCGCGTTCAAAAGGA
TTATCAGAATCTGAAATTTACAGAGGGCATCTCTTCAAAAATGCCATGGTCCCAATTGTGTCAGGGGTTCCTGCAAGTAT
TATCCTTGCTATTGGTGGTGCAACCTTAACAGAGACTGTCTTTGCCTTCCCGGGTATGGGTAAAATGTTAATTGATTCTA
TTAAATCTGCTAACAATTCTATGATTGTTGGATTAACCTTTATCTTCACTGTCTTGTCAATTGTTTCACTTTTACTAGGA
GATATTGTCATGACCCTTGTCGATCCACGTATTAAATTGTCAACAAAAAAAGGAGGTAAGTAA

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(299-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiC Streptococcus salivarius strain HSISS4

59.6

100

0.596
  amiC Streptococcus thermophilus LMD-9

59.2

100

0.592
  amiC Streptococcus thermophilus LMG 18311

59.2

100

0.592

Multiple sequence alignment