Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   BACIH_RS04645 Genome accession   NZ_CP044360
Coordinates   885873..886517 (+) Length   214 a.a.
NCBI ID   WP_012117168.1    Uniprot ID   A7Z2U7
Organism   Bacillus amyloliquefaciens strain V167     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 880873..891517
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BACIH_RS04630 (BACIH_0907) glpD 881036..882703 (+) 1668 WP_003155341.1 glycerol-3-phosphate dehydrogenase -
  BACIH_RS04635 (BACIH_0908) - 882843..884585 (+) 1743 WP_012117166.1 phospho-sugar mutase -
  BACIH_RS04640 (BACIH_0909) - 884731..885873 (+) 1143 WP_012117167.1 GAF domain-containing sensor histidine kinase -
  BACIH_RS04645 (BACIH_0910) vraR 885873..886517 (+) 645 WP_012117168.1 response regulator transcription factor Regulator
  BACIH_RS04650 (BACIH_0911) - 886517..887041 (+) 525 WP_041482183.1 NADPH-dependent FMN reductase -
  BACIH_RS04655 (BACIH_0912) - 887055..887297 (-) 243 WP_003155335.1 YhdB family protein -
  BACIH_RS04660 (BACIH_0913) - 887489..887812 (+) 324 WP_003155332.1 DUF3889 domain-containing protein -
  BACIH_RS04665 (BACIH_0914) - 887857..889311 (-) 1455 WP_012117170.1 LysM peptidoglycan-binding domain-containing protein -
  BACIH_RS04670 (BACIH_0915) nsrR 889490..889924 (-) 435 WP_007409277.1 nitric oxide-sensing transcriptional repressor NsrR -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 23856.26 Da        Isoelectric Point: 5.6484

>NTDB_id=342229 BACIH_RS04645 WP_012117168.1 885873..886517(+) (vraR) [Bacillus amyloliquefaciens strain V167]
MKIVIADDHHVVRKGLRYFFATQEDIEVVGEASTGAEALQQAEKTEPDIILMDLSMPDMDGIEAAKIAAERFPDISIVVL
TSYSDQEHVIPALKAGAKAYQLKDAQPDDLVKTLREVYSGRYRLSADIVPHVLTHMVQDDQDKEKYDQLTPREKDVLQEI
AKGKSNKEIAAALFISEKTVKTHVSNLLSKLNLSDRTQAALYAVKYNVFGKAVK

Nucleotide


Download         Length: 645 bp        

>NTDB_id=342229 BACIH_RS04645 WP_012117168.1 885873..886517(+) (vraR) [Bacillus amyloliquefaciens strain V167]
ATGAAAATTGTGATTGCTGATGATCATCACGTTGTCCGCAAAGGACTGCGCTATTTCTTCGCCACTCAGGAAGACATTGA
AGTTGTCGGTGAGGCGTCCACCGGTGCTGAAGCGCTTCAGCAAGCTGAAAAGACGGAGCCGGACATCATTCTGATGGATT
TATCAATGCCTGATATGGACGGCATAGAAGCGGCAAAAATTGCGGCTGAACGATTCCCGGACATCAGTATCGTCGTTTTG
ACGAGCTATTCTGATCAGGAGCATGTCATTCCCGCCCTTAAAGCCGGCGCAAAAGCGTATCAGCTGAAAGACGCCCAGCC
CGATGATTTAGTGAAAACGCTCCGGGAAGTGTATTCCGGACGTTACCGGCTGTCGGCGGATATTGTGCCTCACGTGCTGA
CCCATATGGTTCAGGATGATCAGGATAAGGAGAAATATGATCAGCTGACCCCTCGTGAAAAAGATGTTCTTCAAGAAATA
GCCAAAGGAAAAAGCAATAAGGAAATTGCGGCGGCACTGTTTATTTCAGAAAAAACAGTGAAGACCCACGTGTCCAACCT
GCTGTCAAAGCTGAATCTTTCCGATCGGACGCAGGCGGCATTGTATGCGGTAAAATATAATGTTTTTGGAAAGGCGGTAA
AATGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(3-114)

Bacterial regulatory proteins, luxR family (GerE)

(148-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7Z2U7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

44.286

98.131

0.435
  degU Bacillus subtilis subsp. subtilis str. 168

38.356

100

0.393

Multiple sequence alignment