Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   F7D04_RS11405 Genome accession   NZ_CP044313
Coordinates   2267973..2268506 (+) Length   177 a.a.
NCBI ID   WP_040089345.1    Uniprot ID   -
Organism   Escherichia coli strain RM11911     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2262973..2273506
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F7D04_RS11380 - 2262989..2263735 (+) 747 WP_057698407.1 MipA/OmpV family protein -
  F7D04_RS11385 - 2263900..2264592 (+) 693 WP_047656104.1 PFL_4669 family integrating conjugative element protein -
  F7D04_RS11390 - 2264608..2266617 (+) 2010 WP_047656105.1 DNA topoisomerase III -
  F7D04_RS11395 - 2267208..2267663 (+) 456 WP_047656108.1 STY4534 family ICE replication protein -
  F7D04_RS11400 - 2267754..2267957 (+) 204 WP_040089344.1 hypothetical protein -
  F7D04_RS11405 ssb 2267973..2268506 (+) 534 WP_040089345.1 single-stranded DNA-binding protein Machinery gene
  F7D04_RS11410 - 2268555..2269487 (+) 933 WP_047656111.1 Rpn family recombination-promoting nuclease/putative transposase -
  F7D04_RS11415 - 2269679..2270275 (+) 597 WP_170989470.1 PilL N-terminal domain-containing protein -
  F7D04_RS11420 - 2270272..2271045 (+) 774 WP_047656116.1 Tat (twin-arginine translocation) pathway signal sequence -
  F7D04_RS11425 - 2271052..2271771 (+) 720 WP_047656118.1 TIGR03759 family integrating conjugative element protein -
  F7D04_RS11430 - 2271750..2272412 (+) 663 WP_151039354.1 lytic transglycosylase domain-containing protein -
  F7D04_RS11435 - 2272409..2272936 (+) 528 WP_047656120.1 integrating conjugative element protein -

Sequence

Protein


Download         Length: 177 a.a.        Molecular weight: 18882.13 Da        Isoelectric Point: 6.8821

>NTDB_id=341932 F7D04_RS11405 WP_040089345.1 2267973..2268506(+) (ssb) [Escherichia coli strain RM11911]
MASRGINKVILIGHLGQDPEIRYLPNGGAVANLTLATSESWRDKQSGEMKEQTEWHRVVIFGKLAEIAGEYLRKGSQVYI
EGQLKTRKWFDQQNGVDRYATEVVVSVNGTLQMLGSPRQQGSGAAPAHSGQGTAGAPAGNSPSPASGNGGGMPMDFDDDI
PFSGPGYGAERRIIHAM

Nucleotide


Download         Length: 534 bp        

>NTDB_id=341932 F7D04_RS11405 WP_040089345.1 2267973..2268506(+) (ssb) [Escherichia coli strain RM11911]
ATGGCGTCACGCGGTATTAATAAGGTGATACTGATTGGACATCTTGGGCAGGATCCAGAGATTCGTTATCTTCCCAATGG
CGGAGCCGTGGCGAACCTGACCCTGGCCACCAGTGAATCCTGGCGTGATAAACAGAGCGGTGAAATGAAGGAGCAGACCG
AGTGGCACCGCGTGGTGATTTTCGGAAAACTGGCGGAGATAGCCGGTGAATACCTGCGCAAGGGTTCACAGGTGTACATC
GAGGGCCAGTTAAAGACCCGGAAGTGGTTCGATCAGCAGAATGGTGTTGATCGCTACGCAACGGAAGTGGTGGTGAGTGT
CAATGGCACCCTGCAGATGCTGGGCTCTCCGCGCCAGCAGGGCAGTGGTGCTGCACCCGCACACAGCGGTCAGGGAACTG
CCGGCGCGCCGGCGGGTAACTCACCGTCACCGGCTTCCGGGAACGGCGGGGGAATGCCGATGGATTTTGACGACGACATT
CCTTTCAGTGGACCGGGATATGGCGCTGAACGGCGGATTATCCATGCCATGTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(6-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

61.667

100

0.627
  ssb Glaesserella parasuis strain SC1401

50.82

100

0.525
  ssb Neisseria meningitidis MC58

43.258

100

0.435
  ssb Neisseria gonorrhoeae MS11

43.258

100

0.435

Multiple sequence alignment