Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   SALIVB_RS02750 Genome accession   NC_015760
Coordinates   535143..535829 (+) Length   228 a.a.
NCBI ID   WP_013990213.1    Uniprot ID   -
Organism   Streptococcus salivarius CCHSS3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 530143..540829
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SALIVB_RS02730 (SALIVB_0551) - 530507..531445 (+) 939 WP_013990210.1 glycosyltransferase family 2 protein -
  SALIVB_RS02735 (SALIVB_0552) - 531446..532252 (+) 807 WP_002886828.1 ABC transporter permease -
  SALIVB_RS02740 (SALIVB_0553) - 532252..533454 (+) 1203 WP_013990211.1 polysaccharide ABC transporter ATP-binding protein -
  SALIVB_RS02745 (SALIVB_0554) - 533455..535098 (+) 1644 WP_013990212.1 rhamnan synthesis F family protein -
  SALIVB_RS02750 (SALIVB_0555) radC 535143..535829 (+) 687 WP_013990213.1 RadC family protein Machinery gene
  SALIVB_RS02755 (SALIVB_0556) - 535887..536582 (-) 696 WP_013990214.1 gamma-glutamyl-gamma-aminobutyrate hydrolase family protein -
  SALIVB_RS02760 (SALIVB_0557) - 536575..537234 (-) 660 WP_013990215.1 redox-sensing transcriptional repressor Rex -
  SALIVB_RS02765 (SALIVB_0558) - 537376..537723 (-) 348 WP_002884733.1 DUF1831 domain-containing protein -
  SALIVB_RS02770 (SALIVB_0559) - 537725..538837 (-) 1113 WP_013990216.1 cysteine desulfurase family protein -
  SALIVB_RS02775 (SALIVB_0560) - 538841..539812 (-) 972 WP_013990217.1 ribose-phosphate diphosphokinase -
  SALIVB_RS02780 (SALIVB_0561) - 540087..540662 (-) 576 WP_013990218.1 CYTH domain-containing protein -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25804.89 Da        Isoelectric Point: 7.4016

>NTDB_id=34185 SALIVB_RS02750 WP_013990213.1 535143..535829(+) (radC) [Streptococcus salivarius CCHSS3]
MYSIVSEEAGLLPRERLLQKGAEVLSDQELLAIVLRTGTKSESVLSMANRILRGMTSLADLSRLSLNELQKIPGIGRVKS
IELKAMVELAKRIEKAELARSEQIMSSQQVARRMMLDIGDKPQEHLVAIYLDTQNRVIQQKTVFIGGVRRSIAEPREILH
YACHLMATSLIVVHNHPSGEAYPSRNDIDFTQKIKRSCDDLGICLLDHLIVGKSTYYSFREEREDFEL

Nucleotide


Download         Length: 687 bp        

>NTDB_id=34185 SALIVB_RS02750 WP_013990213.1 535143..535829(+) (radC) [Streptococcus salivarius CCHSS3]
ATGTATAGTATTGTATCTGAGGAGGCGGGGCTTTTGCCTCGTGAGCGACTCTTACAGAAGGGAGCAGAGGTTTTATCGGA
TCAGGAGTTATTGGCGATAGTACTACGAACAGGGACCAAATCTGAGTCGGTCTTATCTATGGCTAATCGTATTTTGAGAG
GGATGACGAGTTTGGCGGATTTGTCTCGTTTGTCTTTGAATGAGCTTCAGAAGATTCCTGGTATTGGACGTGTGAAGTCG
ATTGAGCTCAAGGCTATGGTGGAGTTGGCTAAGCGGATTGAGAAGGCTGAGTTGGCTCGTTCCGAGCAGATTATGTCCAG
TCAGCAGGTGGCCCGTCGTATGATGTTGGATATTGGGGATAAGCCTCAGGAGCATCTGGTGGCTATCTATTTGGATACGC
AGAATCGTGTTATTCAGCAGAAGACGGTCTTTATTGGTGGTGTTCGTCGTTCGATTGCTGAGCCACGTGAGATTTTGCAT
TATGCTTGTCATCTGATGGCAACGTCCCTGATTGTGGTTCACAATCATCCATCGGGTGAGGCCTATCCGAGTCGAAATGA
TATTGATTTTACGCAAAAGATTAAGCGGTCTTGCGATGATTTGGGGATTTGTCTGCTTGATCATCTGATTGTTGGCAAAT
CGACCTATTATTCTTTTCGTGAGGAGAGGGAGGATTTTGAGCTTTAG

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(105-222)

UPF0758 N-terminal (UPF0758_N)

(13-80)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Streptococcus pneumoniae TIGR4

58.482

98.246

0.575
  radC Streptococcus pneumoniae R6

58.036

98.246

0.57
  radC Streptococcus pneumoniae D39

58.036

98.246

0.57
  radC Streptococcus gordonii str. Challis substr. CH1

57.658

97.368

0.561
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

49.057

92.982

0.456

Multiple sequence alignment