Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   SALIVB_RS02265 Genome accession   NC_015760
Coordinates   431096..432055 (+) Length   319 a.a.
NCBI ID   WP_013990146.1    Uniprot ID   -
Organism   Streptococcus salivarius CCHSS3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 426096..437055
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SALIVB_RS02250 (SALIVB_0448) - 427651..428490 (+) 840 WP_013990143.1 CHAP domain-containing protein -
  SALIVB_RS10925 - 428928..429772 (-) 845 Protein_385 IS3 family transposase -
  SALIVB_RS02265 (SALIVB_0452) coiA 431096..432055 (+) 960 WP_013990146.1 competence protein CoiA Machinery gene
  SALIVB_RS02270 (SALIVB_0453) pepF 432066..433871 (+) 1806 WP_013990147.1 oligoendopeptidase F Regulator
  SALIVB_RS02275 (SALIVB_0454) - 434083..435303 (+) 1221 WP_013990148.1 OFA family MFS transporter -
  SALIVB_RS02280 (SALIVB_0455) - 435375..436082 (+) 708 WP_013990149.1 O-methyltransferase -

Sequence

Protein


Download         Length: 319 a.a.        Molecular weight: 37859.71 Da        Isoelectric Point: 9.4163

>NTDB_id=34178 SALIVB_RS02265 WP_013990146.1 431096..432055(+) (coiA) [Streptococcus salivarius CCHSS3]
MLIAKNQEGNLVSALETCLKRKESYSCPGCQGVVLLRHGQVMCPHFAHKSLQDCQFFSENESAQHLSLKAALYKSLVNHG
EKVSIEKVLSELGQIADLFVGDSLALEVQCSRLSQQRLRERTCAYHQAGYEVRWLLGEELWLNGRLTDLQRDFLYFTAKI
GFHLWELDWKREEIRLKYLIYEDIFGKVYYLTKAWPLTENLMTVLRFPYQAEQVETYKVTQRKKVSHVIQRELMGKNPRW
MRRQEEAYLKGMNLLCLSDQDFFPQVRFPESKQGFVQIRQSLEGFEKLFKQYYRKRHFSYRQTLYPPTFYAKIVKNRHN

Nucleotide


Download         Length: 960 bp        

>NTDB_id=34178 SALIVB_RS02265 WP_013990146.1 431096..432055(+) (coiA) [Streptococcus salivarius CCHSS3]
ATGTTAATTGCAAAAAATCAGGAGGGAAACCTCGTTTCAGCTCTAGAAACCTGTTTGAAACGTAAGGAATCCTATAGCTG
TCCTGGATGCCAGGGAGTTGTCCTATTGAGGCATGGCCAGGTAATGTGCCCACATTTTGCTCATAAATCTTTGCAAGATT
GTCAGTTCTTCTCGGAGAATGAATCGGCTCAACATTTATCGCTTAAGGCAGCCTTATATAAATCTTTGGTTAATCATGGT
GAAAAAGTAAGTATTGAAAAGGTTTTGTCCGAGTTGGGGCAAATTGCAGATTTATTTGTTGGCGATTCCCTGGCTCTAGA
AGTTCAGTGTTCTCGTTTATCCCAGCAACGTTTGAGAGAGAGGACATGTGCCTATCACCAAGCAGGTTACGAAGTGCGTT
GGCTTTTGGGTGAGGAACTCTGGTTGAATGGACGTTTAACAGACCTACAGCGGGACTTTCTCTATTTTACGGCTAAGATA
GGATTTCACCTATGGGAGCTTGATTGGAAGCGAGAGGAAATTAGACTTAAGTATCTCATCTATGAGGATATTTTTGGGAA
AGTCTATTATTTAACTAAGGCCTGGCCACTAACCGAAAATCTCATGACAGTTTTACGTTTTCCTTATCAAGCAGAGCAGG
TTGAGACTTATAAAGTAACTCAGCGAAAGAAGGTCTCACATGTGATTCAACGAGAATTAATGGGGAAAAATCCAAGGTGG
ATGAGAAGGCAGGAAGAAGCCTATCTTAAGGGAATGAATTTGTTATGCCTGTCTGATCAGGATTTTTTTCCACAAGTGAG
ATTTCCAGAATCTAAGCAGGGTTTTGTACAAATTAGACAGTCACTTGAAGGTTTTGAAAAGCTTTTTAAGCAATATTATC
GAAAAAGGCATTTTTCTTATCGACAAACTCTCTACCCTCCCACCTTTTATGCTAAAATAGTAAAGAATAGACACAATTAA

Domains

Predicted by InterProScan.

Competence protein CoiA-like family (CoiA_nuc)

(1-276)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Streptococcus pneumoniae TIGR4

45.659

97.492

0.445
  coiA Streptococcus pneumoniae Rx1

45.659

97.492

0.445
  coiA Streptococcus pneumoniae D39

45.659

97.492

0.445
  coiA Streptococcus pneumoniae R6

45.659

97.492

0.445
  coiA Streptococcus mitis NCTC 12261

45.659

97.492

0.445
  coiA Lactococcus lactis subsp. cremoris KW2

36.667

100

0.379

Multiple sequence alignment