Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYF   Type   Machinery gene
Locus tag   ETT64_RS00790 Genome accession   NZ_CP035435
Coordinates   118427..118861 (+) Length   144 a.a.
NCBI ID   WP_002992738.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain emm64.3     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 113427..123861
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ETT64_RS00760 (ETT64_00760) - 115096..115461 (+) 366 WP_002986560.1 DUF1033 family protein -
  ETT64_RS00765 (ETT64_00765) comYA 115554..116492 (+) 939 WP_063812149.1 competence type IV pilus ATPase ComGA Machinery gene
  ETT64_RS00770 (ETT64_00770) comYB 116428..117462 (+) 1035 WP_227868957.1 competence type IV pilus assembly protein ComGB Machinery gene
  ETT64_RS00775 (ETT64_00775) comYC 117464..117790 (+) 327 WP_011528161.1 competence type IV pilus major pilin ComGC Machinery gene
  ETT64_RS00780 (ETT64_00780) comGD 117765..118193 (+) 429 WP_136293154.1 competence type IV pilus minor pilin ComGD -
  ETT64_RS00785 (ETT64_00785) comGE 118150..118434 (+) 285 WP_315940846.1 competence type IV pilus minor pilin ComGE -
  ETT64_RS00790 (ETT64_00790) comYF 118427..118861 (+) 435 WP_002992738.1 competence type IV pilus minor pilin ComGF Machinery gene
  ETT64_RS00795 (ETT64_00795) comGG 118845..119171 (+) 327 WP_010921801.1 competence type IV pilus minor pilin ComGG -
  ETT64_RS00800 (ETT64_00800) comYH 119269..120222 (+) 954 WP_136293153.1 class I SAM-dependent methyltransferase Machinery gene
  ETT64_RS00805 (ETT64_00805) - 120281..121477 (+) 1197 WP_011284424.1 acetate kinase -
  ETT64_RS00810 (ETT64_00810) - 121664..121972 (+) 309 Protein_111 hypothetical protein -
  ETT64_RS00815 (ETT64_00815) proC 122055..122825 (-) 771 WP_136293152.1 pyrroline-5-carboxylate reductase -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 16645.27 Da        Isoelectric Point: 10.2526

>NTDB_id=341411 ETT64_RS00790 WP_002992738.1 118427..118861(+) (comYF) [Streptococcus pyogenes strain emm64.3]
MSKQLSNIKAFTLLEALIALLVISGSLLVYQGLTQTLLKRSHYLARHDQDNWLLFSHQLREELSGARFYKVADNKLYVEK
GKKVLAFGQFKSHDFRKSASNGKGYQPMLFGISRSHIHIEQSQICITLKWKSGLERTFYYAFQD

Nucleotide


Download         Length: 435 bp        

>NTDB_id=341411 ETT64_RS00790 WP_002992738.1 118427..118861(+) (comYF) [Streptococcus pyogenes strain emm64.3]
TTGAGTAAACAATTAAGTAACATAAAAGCTTTTACCCTTCTAGAGGCGTTAATAGCCTTACTCGTGATATCAGGGTCTTT
ATTGGTTTATCAAGGTTTGACCCAAACCCTCCTTAAACGTAGCCATTATCTGGCCCGTCATGATCAAGACAATTGGCTCT
TATTTTCTCATCAATTGCGAGAGGAGTTAAGTGGAGCAAGATTTTACAAAGTAGCTGATAATAAACTATACGTTGAAAAA
GGAAAGAAAGTACTAGCTTTTGGCCAATTTAAAAGTCATGATTTTCGAAAATCAGCTAGTAATGGAAAAGGGTATCAACC
CATGTTATTTGGAATATCACGTAGTCATATTCACATAGAGCAGTCACAGATTTGCATTACTTTAAAGTGGAAAAGTGGGT
TAGAAAGGACTTTTTATTATGCCTTTCAAGACTAA

Domains

Predicted by InterproScan.

Putative Competence protein ComGF (ComGF)

(41-135)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYF Streptococcus mutans UA140

51.079

96.528

0.493
  comYF Streptococcus mutans UA159

50.36

96.528

0.486
  comGF Lactococcus lactis subsp. cremoris KW2

46.715

95.139

0.444
  comGF/cglF Streptococcus mitis NCTC 12261

44.776

93.056

0.417
  comGF/cglF Streptococcus pneumoniae Rx1

43.609

92.361

0.403
  comGF/cglF Streptococcus pneumoniae D39

43.609

92.361

0.403
  comGF/cglF Streptococcus pneumoniae R6

43.609

92.361

0.403
  comGF/cglF Streptococcus pneumoniae TIGR4

43.609

92.361

0.403
  comGF/cglF Streptococcus mitis SK321

42.857

92.361

0.396

Multiple sequence alignment