Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   F4V31_RS06035 Genome accession   NZ_CP044162
Coordinates   1141503..1141886 (+) Length   127 a.a.
NCBI ID   WP_002898550.1    Uniprot ID   -
Organism   Campylobacter jejuni strain AR-0419     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1136503..1146886
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F4V31_RS06015 - 1136582..1138516 (-) 1935 WP_002928089.1 ribonuclease R family protein -
  F4V31_RS06020 ilvC 1138635..1139657 (+) 1023 WP_002898544.1 ketol-acid reductoisomerase -
  F4V31_RS06025 - 1139661..1140743 (+) 1083 WP_002898546.1 divergent polysaccharide deacetylase family protein -
  F4V31_RS06030 dprA 1140733..1141506 (+) 774 WP_002928088.1 DNA-processing protein DprA Machinery gene
  F4V31_RS06035 dprB 1141503..1141886 (+) 384 WP_002898550.1 Holliday junction resolvase RuvX Machinery gene
  F4V31_RS06040 - 1141915..1142754 (+) 840 WP_010891872.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  F4V31_RS06045 msrA 1142930..1143427 (-) 498 WP_002898554.1 peptide-methionine (S)-S-oxide reductase MsrA -
  F4V31_RS06050 ppa 1143468..1143986 (-) 519 WP_002867724.1 inorganic diphosphatase -
  F4V31_RS06055 adk 1143996..1144574 (-) 579 WP_002859580.1 adenylate kinase -
  F4V31_RS06060 aspS 1144571..1146322 (-) 1752 WP_002890710.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 127 a.a.        Molecular weight: 14144.66 Da        Isoelectric Point: 9.0848

>NTDB_id=341272 F4V31_RS06035 WP_002898550.1 1141503..1141886(+) (dprB) [Campylobacter jejuni strain AR-0419]
MRALALDVGLKRIGVALCIDKKIALPLDAVLRKNRNQAANEIKNLLKIHEISLLIVGIPKGGSSEEEMTRRIKHFVSLLE
FDKEICFVDESGTSKEALEYGVANTRKKDGKLDSLAAFIMIKDYFAL

Nucleotide


Download         Length: 384 bp        

>NTDB_id=341272 F4V31_RS06035 WP_002898550.1 1141503..1141886(+) (dprB) [Campylobacter jejuni strain AR-0419]
ATGAGAGCTTTGGCTTTAGATGTAGGTTTAAAACGCATAGGTGTAGCGCTTTGCATAGATAAAAAGATCGCTTTGCCTTT
AGATGCAGTTTTAAGAAAAAATCGCAATCAAGCCGCTAATGAAATCAAAAATTTACTTAAAATACATGAAATTTCTTTAC
TCATTGTAGGCATTCCTAAGGGTGGATCAAGCGAAGAAGAAATGACAAGACGCATTAAGCATTTTGTTTCTTTGCTTGAA
TTTGATAAAGAAATTTGTTTTGTAGATGAAAGCGGAACAAGTAAAGAAGCTTTAGAATACGGCGTAGCCAATACACGCAA
AAAAGATGGTAAATTAGATTCTTTAGCTGCTTTTATCATGATAAAGGATTATTTTGCTCTCTAG

Domains

Predicted by InterProScan.

Holliday junction resolvase (RuvX)

(1-125)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

44.882

100

0.449

Multiple sequence alignment