Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   SGPB_RS04615 Genome accession   NC_015600
Coordinates   910842..911522 (+) Length   226 a.a.
NCBI ID   WP_013851770.1    Uniprot ID   F5X6A8
Organism   Streptococcus pasteurianus ATCC 43144     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 905842..916522
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SGPB_RS04590 (SGPB_0865) - 906886..907500 (+) 615 WP_013851767.1 histidine phosphatase family protein -
  SGPB_RS04595 (SGPB_0866) - 907503..908126 (+) 624 WP_013851768.1 histidine phosphatase family protein -
  SGPB_RS04600 (SGPB_0867) - 908119..908721 (+) 603 WP_003064601.1 histidine phosphatase family protein -
  SGPB_RS04605 (SGPB_0868) - 908830..909948 (+) 1119 WP_013851769.1 AI-2E family transporter -
  SGPB_RS04610 (SGPB_0869) - 909955..910794 (+) 840 WP_003064605.1 glycosyltransferase family 8 protein -
  SGPB_RS04615 (SGPB_0870) radC 910842..911522 (+) 681 WP_013851770.1 RadC family protein Machinery gene
  SGPB_RS04620 (SGPB_0871) - 911669..912316 (-) 648 WP_003064608.1 redox-sensing transcriptional repressor Rex -
  SGPB_RS04625 (SGPB_0872) - 912461..912808 (-) 348 WP_003064609.1 DUF1831 domain-containing protein -
  SGPB_RS04630 (SGPB_0873) - 912810..913925 (-) 1116 WP_013851771.1 cysteine desulfurase family protein -
  SGPB_RS04635 (SGPB_0874) - 913933..914904 (-) 972 WP_003064611.1 ribose-phosphate diphosphokinase -
  SGPB_RS04640 (SGPB_0875) - 914990..915559 (-) 570 WP_003064612.1 CYTH domain-containing protein -
  SGPB_RS04645 (SGPB_0876) - 915692..916357 (+) 666 WP_003064613.1 GTP pyrophosphokinase -

Sequence

Protein


Download         Length: 226 a.a.        Molecular weight: 26049.18 Da        Isoelectric Point: 7.0420

>NTDB_id=34098 SGPB_RS04615 WP_013851770.1 910842..911522(+) (radC) [Streptococcus pasteurianus ATCC 43144]
MYAIEMKADAMLPRERLRDLGAEHLSNQELLSILLRTGTKATPVLEVANQILKNLDSLADFQHLSLQELQQINGIGYVKS
IEIKAMIELAKRISKAEYIQKERIMSSERLARKMMLELSDQKQEHLVAIYLDTQNRIIEQRTIFIGSVRRSIAEPREILY
YACKNMATSVIIVHNHPSGSPEPSENDLRFTQKIKRSCEDIGIICLDHIVIGKYQYYSFREETDVL

Nucleotide


Download         Length: 681 bp        

>NTDB_id=34098 SGPB_RS04615 WP_013851770.1 910842..911522(+) (radC) [Streptococcus pasteurianus ATCC 43144]
ATGTATGCAATTGAAATGAAAGCAGATGCTATGTTGCCACGAGAACGCTTGAGAGACTTAGGGGCAGAGCATCTTAGCAA
TCAGGAACTATTATCTATTTTATTACGAACAGGAACAAAAGCAACCCCAGTTTTGGAAGTTGCCAATCAAATCTTGAAAA
ATTTAGATAGCTTAGCTGATTTTCAACACCTATCCCTGCAAGAATTGCAACAAATCAATGGTATTGGTTATGTTAAATCA
ATTGAAATCAAAGCAATGATTGAACTAGCAAAGCGCATTAGCAAGGCTGAATATATCCAAAAAGAACGCATTATGAGCAG
CGAACGTCTAGCGCGTAAAATGATGTTAGAATTGAGTGACCAAAAACAAGAACATTTGGTGGCTATTTATCTGGATACGC
AAAATCGAATCATTGAACAACGAACGATTTTTATCGGTTCTGTTCGCCGTTCGATTGCTGAACCACGTGAAATTCTCTAT
TATGCATGCAAAAATATGGCAACATCAGTTATTATTGTCCATAATCATCCGTCAGGCTCCCCAGAGCCAAGTGAGAATGA
TCTGCGATTTACTCAAAAAATAAAACGCTCTTGTGAAGATATTGGTATTATTTGCCTTGACCATATCGTCATTGGAAAAT
ACCAATATTACAGCTTCCGAGAAGAAACAGATGTTTTGTAA

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(12-80)

RadC-like JAB domain (RadC)

(106-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB F5X6A8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Streptococcus gordonii str. Challis substr. CH1

59.735

100

0.597
  radC Streptococcus pneumoniae TIGR4

58.85

100

0.589
  radC Streptococcus pneumoniae R6

58.407

100

0.584
  radC Streptococcus pneumoniae D39

58.407

100

0.584
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

46.19

92.92

0.429