Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   ETL60_RS21425 Genome accession   NZ_CP035414
Coordinates   4010128..4010646 (-) Length   172 a.a.
NCBI ID   WP_003219228.1    Uniprot ID   A0A063XE16
Organism   Bacillus subtilis strain SRCM103637     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4005128..4015646
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ETL60_RS21395 (ETL60_21395) yyaJ 4005632..4006987 (+) 1356 WP_014481501.1 MFS transporter -
  ETL60_RS21400 (ETL60_21400) maa 4007021..4007575 (-) 555 WP_046161083.1 sugar O-acetyltransferase -
  ETL60_RS21405 (ETL60_21405) yyaH 4007593..4007973 (-) 381 WP_003244460.1 VOC family protein -
  ETL60_RS21410 (ETL60_21410) ccpB 4008029..4008964 (-) 936 WP_046161084.1 transcriptional regulator CcpB -
  ETL60_RS21415 (ETL60_21415) xth 4009023..4009781 (-) 759 WP_015250782.1 exodeoxyribonuclease III -
  ETL60_RS21420 (ETL60_21420) rpsR 4009845..4010084 (-) 240 WP_003219224.1 30S ribosomal protein S18 -
  ETL60_RS21425 (ETL60_21425) ssbA 4010128..4010646 (-) 519 WP_003219228.1 single-stranded DNA-binding protein SsbA Machinery gene
  ETL60_RS21430 (ETL60_21430) rpsF 4010687..4010974 (-) 288 WP_003244064.1 30S ribosomal protein S6 -
  ETL60_RS21435 (ETL60_21435) ychF 4011085..4012185 (-) 1101 WP_003242727.1 redox-regulated ATPase YchF -
  ETL60_RS21440 (ETL60_21440) yyaE 4012312..4014315 (-) 2004 WP_046161085.1 molybdopterin-dependent oxidoreductase -
  ETL60_RS21445 (ETL60_21445) yyzM 4014366..4014572 (-) 207 WP_003226838.1 DUF951 family protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18742.31 Da        Isoelectric Point: 4.7621

>NTDB_id=340914 ETL60_RS21425 WP_003219228.1 4010128..4010646(-) (ssbA) [Bacillus subtilis strain SRCM103637]
MLNRVVLVGRLTKDPELRYTPNGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKNGGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=340914 ETL60_RS21425 WP_003219228.1 4010128..4010646(-) (ssbA) [Bacillus subtilis strain SRCM103637]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAACGGTGCGGCTGTTGC
TACGTTTACTCTTGCTGTGAATCGTACATTTACGAACCAGTCCGGAGAACGTGAGGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTCTTGAAAAAAGGAAGCCTTGCAGGCGTAGATGGCCGTTTACAAACAAGA
AACTATGAAAACCAGCAAGGACAGCGTGTCTTCGTGACAGAGGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCGAAAAA
CGGCGGCGGTTCTGGTTCAGGTGGATACAACGAAGGAAACAGCGGCGGAGGCCAGTACTTTGGCGGAGGCCAAAATGATA
ATCCATTTGGGGGAAATCAAAACAACCAGAGACGCAATCAGGGGAACAGCTTTAATGATGACCCATTTGCCAACGACGGC
AAACCGATTGACATCTCGGATGATGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A063XE16

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

100

100

1
  ssb Latilactobacillus sakei subsp. sakei 23K

58.192

100

0.599
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.628

0.395
  ssb Glaesserella parasuis strain SC1401

35.519

100

0.378

Multiple sequence alignment