Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   F4V42_RS08920 Genome accession   NZ_CP044140
Coordinates   1583921..1584457 (-) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A370V115
Organism   Escherichia coli O157 strain AR-0430     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1578921..1589457
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F4V42_RS08900 soxR 1580650..1581114 (-) 465 WP_000412428.1 redox-sensitive transcriptional activator SoxR -
  F4V42_RS08905 soxS 1581200..1581523 (+) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  F4V42_RS08910 pdeC 1581526..1583112 (-) 1587 WP_001016522.1 c-di-GMP phosphodiesterase PdeC -
  F4V42_RS08915 yjcB 1583541..1583822 (+) 282 WP_001295689.1 YjcB family protein -
  F4V42_RS08920 ssb 1583921..1584457 (-) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  F4V42_RS08925 uvrA 1584712..1587534 (+) 2823 WP_000357763.1 excinuclease ABC subunit UvrA Machinery gene
  F4V42_RS08930 yjbR 1587569..1587925 (-) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  F4V42_RS08935 yjbQ 1587929..1588345 (-) 417 WP_000270375.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  F4V42_RS08940 aphA 1588456..1589169 (-) 714 WP_001226923.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=340895 F4V42_RS08920 WP_000168305.1 1583921..1584457(-) (ssb) [Escherichia coli O157 strain AR-0430]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=340895 F4V42_RS08920 WP_000168305.1 1583921..1584457(-) (ssb) [Escherichia coli O157 strain AR-0430]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAGCAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCTGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGACGATATTCCGTTCTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A370V115

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489