Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   ETL60_RS12640 Genome accession   NZ_CP035414
Coordinates   2349657..2349953 (-) Length   98 a.a.
NCBI ID   WP_003230162.1    Uniprot ID   A0A809FGR8
Organism   Bacillus subtilis strain SRCM103637     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2344657..2354953
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ETL60_RS12595 (ETL60_12595) tasA 2345065..2345850 (-) 786 WP_014480250.1 biofilm matrix protein TasA -
  ETL60_RS12600 (ETL60_12600) sipW 2345914..2346486 (-) 573 WP_003230181.1 signal peptidase I SipW -
  ETL60_RS12605 (ETL60_12605) tapA 2346470..2347231 (-) 762 WP_087614619.1 amyloid fiber anchoring/assembly protein TapA -
  ETL60_RS12610 (ETL60_12610) yqzG 2347503..2347829 (+) 327 WP_029317915.1 YqzG/YhdC family protein -
  ETL60_RS12615 (ETL60_12615) spoIITA 2347871..2348050 (-) 180 WP_014480252.1 YqzE family protein -
  ETL60_RS12620 (ETL60_12620) comGG 2348121..2348495 (-) 375 WP_015714252.1 ComG operon protein ComGG Machinery gene
  ETL60_RS12625 (ETL60_12625) comGF 2348496..2348879 (-) 384 WP_076458111.1 ComG operon protein ComGF Machinery gene
  ETL60_RS12630 (ETL60_12630) comGE 2348905..2349252 (-) 348 WP_087614620.1 ComG operon protein 5 Machinery gene
  ETL60_RS12635 (ETL60_12635) comGD 2349236..2349667 (-) 432 WP_080529538.1 comG operon protein ComGD Machinery gene
  ETL60_RS12640 (ETL60_12640) comGC 2349657..2349953 (-) 297 WP_003230162.1 comG operon protein ComGC Machinery gene
  ETL60_RS12645 (ETL60_12645) comGB 2349967..2351004 (-) 1038 WP_029317912.1 comG operon protein ComGB Machinery gene
  ETL60_RS12650 (ETL60_12650) comGA 2350991..2352061 (-) 1071 WP_004399124.1 competence protein ComGA Machinery gene
  ETL60_RS12655 (ETL60_12655) - 2352273..2352470 (-) 198 WP_014480259.1 CBS domain-containing protein -
  ETL60_RS12660 (ETL60_12660) corA 2352472..2353425 (-) 954 WP_014480260.1 magnesium transporter CorA -
  ETL60_RS12665 (ETL60_12665) yqhB 2353567..2354895 (+) 1329 WP_014480261.1 hemolysin family protein -

Sequence

Protein


Download         Length: 98 a.a.        Molecular weight: 10849.74 Da        Isoelectric Point: 6.7083

>NTDB_id=340881 ETL60_RS12640 WP_003230162.1 2349657..2349953(-) (comGC) [Bacillus subtilis strain SRCM103637]
MNEKGFTLVEMLIVLFIISILLLITIPNVTKHNQTIQKKGCEGLQNMVKAQMTAFELDHEGQTPSLADLQSEGYVKKDAV
CPNGKRIIITGGEVKVEH

Nucleotide


Download         Length: 297 bp        

>NTDB_id=340881 ETL60_RS12640 WP_003230162.1 2349657..2349953(-) (comGC) [Bacillus subtilis strain SRCM103637]
ATGAATGAGAAAGGATTTACACTTGTTGAAATGTTAATCGTGCTCTTTATTATTTCGATCTTGCTTTTAATTACGATACC
GAACGTCACGAAACATAACCAAACCATTCAAAAAAAGGGCTGTGAAGGCTTACAAAACATGGTTAAGGCACAAATGACTG
CATTTGAGCTTGATCATGAAGGACAAACTCCGAGCCTTGCCGATTTACAGTCAGAGGGCTATGTGAAAAAGGATGCTGTC
TGTCCAAATGGTAAGCGCATTATCATCACCGGCGGAGAAGTTAAGGTTGAACATTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A809FGR8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Bacillus subtilis subsp. subtilis str. 168

100

100

1
  comGC Staphylococcus aureus MW2

41.304

93.878

0.388
  comGC Staphylococcus aureus N315

41.304

93.878

0.388
  comYC Streptococcus suis isolate S10

49.333

76.531

0.378

Multiple sequence alignment