Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   FOB62_RS11670 Genome accession   NZ_CP044102
Coordinates   1587967..1588632 (+) Length   221 a.a.
NCBI ID   WP_003056754.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae strain FDAARGOS_654     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1582967..1593632
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOB62_RS08015 (FOB62_08020) - 1583025..1584425 (+) 1401 WP_014612502.1 bifunctional Cof-type HAD-IIB family hydrolase/peptidylprolyl isomerase -
  FOB62_RS08020 (FOB62_08025) - 1584425..1584784 (+) 360 WP_003056775.1 S1 RNA-binding domain-containing protein -
  FOB62_RS08025 (FOB62_08030) cysK 1584937..1585872 (-) 936 WP_004230536.1 cysteine synthase A -
  FOB62_RS08030 (FOB62_08035) - 1585976..1586614 (-) 639 WP_004230529.1 YigZ family protein -
  FOB62_RS08035 (FOB62_08040) comFA/cflA 1586670..1587995 (+) 1326 WP_046177667.1 DEAD/DEAH box helicase Machinery gene
  FOB62_RS11670 (FOB62_08045) comFC/cflB 1587967..1588632 (+) 666 WP_003056754.1 ComF family protein Machinery gene
  FOB62_RS08045 (FOB62_08050) raiA 1588712..1589260 (+) 549 WP_014612499.1 ribosome-associated translation inhibitor RaiA -
  FOB62_RS08050 (FOB62_08055) - 1589390..1590370 (+) 981 WP_014612165.1 IS30 family transposase -
  FOB62_RS11270 - 1590514..1590654 (+) 141 WP_022554235.1 hypothetical protein -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 25334.36 Da        Isoelectric Point: 8.7003

>NTDB_id=340635 FOB62_RS11670 WP_003056754.1 1587967..1588632(+) (comFC/cflB) [Streptococcus dysgalactiae strain FDAARGOS_654]
MICLLCQQFSPLPLRITDILFLKPQTTTLCQECQQGFQKISFTSCQACNAPSQSSPCSDCLEWKVKGYEVNHKSLYQYNA
AMKAYFSQYKFQGDYLLRHVFAQELAQVIKKDYPDFTPVPVPISKERYEERHFNQVTAILEAGNINYCMLFKRMDTSRQS
SKTKNERLLSKDAYRLSTLSELPAKILIIDDIYTTGSTIIALKKLLMHVGNSDIKSLSIAR

Nucleotide


Download         Length: 666 bp        

>NTDB_id=340635 FOB62_RS11670 WP_003056754.1 1587967..1588632(+) (comFC/cflB) [Streptococcus dysgalactiae strain FDAARGOS_654]
ATGATATGCCTCCTATGTCAACAATTTAGTCCATTACCCTTGCGAATAACGGATATTCTCTTTTTGAAACCTCAAACAAC
AACTCTCTGTCAGGAGTGTCAACAAGGGTTTCAAAAGATAAGCTTCACGAGTTGCCAAGCCTGTAACGCTCCTTCCCAAA
GCTCTCCATGTTCTGATTGTTTAGAATGGAAAGTCAAAGGATACGAGGTTAATCACAAAAGTTTATATCAGTATAACGCT
GCTATGAAAGCTTATTTTAGCCAATATAAGTTTCAAGGAGACTACTTGCTAAGACATGTCTTTGCTCAAGAATTAGCCCA
AGTTATTAAAAAAGACTATCCAGATTTTACTCCTGTTCCAGTTCCTATCAGTAAGGAGCGTTATGAAGAACGTCATTTCA
ATCAAGTGACTGCTATACTTGAAGCAGGGAATATTAACTATTGCATGCTTTTTAAAAGAATGGATACTAGCCGTCAGTCT
TCTAAAACTAAAAATGAAAGATTATTATCCAAAGATGCCTATCGTCTCTCCACCCTCTCTGAATTACCAGCAAAAATCCT
CATTATTGATGATATTTACACTACCGGTAGCACCATTATCGCTTTGAAAAAACTATTAATGCATGTTGGAAATAGTGACA
TCAAAAGTTTGTCAATTGCACGTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus mitis NCTC 12261

41.629

100

0.416
  comFC/cflB Streptococcus mitis SK321

41.176

100

0.412
  comFC/cflB Streptococcus pneumoniae TIGR4

40.724

100

0.407
  comFC/cflB Streptococcus pneumoniae Rx1

40.271

100

0.403
  comFC/cflB Streptococcus pneumoniae D39

40.271

100

0.403
  comFC/cflB Streptococcus pneumoniae R6

40.271

100

0.403

Multiple sequence alignment