Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   ETK61_RS22705 Genome accession   NZ_CP035406
Coordinates   4211099..4211617 (-) Length   172 a.a.
NCBI ID   WP_003219228.1    Uniprot ID   A0A063XE16
Organism   Bacillus subtilis strain SRCM103612     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4206099..4216617
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ETK61_RS22670 (ETK61_22675) yyaJ 4206453..4207804 (+) 1352 Protein_4399 MFS transporter -
  ETK61_RS22675 (ETK61_22680) maa 4207838..4208392 (-) 555 WP_095844123.1 sugar O-acetyltransferase -
  ETK61_RS22680 (ETK61_22685) yyaH 4208408..4208788 (-) 381 WP_015250784.1 VOC family protein -
  ETK61_RS22685 (ETK61_22690) - 4208844..4208966 (-) 123 Protein_4402 catabolite control protein B -
  ETK61_RS22690 (ETK61_22695) ccpB 4209000..4209935 (-) 936 WP_041337894.1 transcriptional regulator CcpB -
  ETK61_RS22695 (ETK61_22700) xth 4209995..4210753 (-) 759 WP_041336712.1 exodeoxyribonuclease III -
  ETK61_RS22700 (ETK61_22705) rpsR 4210816..4211055 (-) 240 WP_003219224.1 30S ribosomal protein S18 -
  ETK61_RS22705 (ETK61_22710) ssbA 4211099..4211617 (-) 519 WP_003219228.1 single-stranded DNA-binding protein SsbA Machinery gene
  ETK61_RS22710 (ETK61_22715) rpsF 4211658..4211945 (-) 288 WP_003244064.1 30S ribosomal protein S6 -
  ETK61_RS22715 (ETK61_22720) ychF 4212056..4213156 (-) 1101 WP_003242727.1 redox-regulated ATPase YchF -
  ETK61_RS22720 (ETK61_22725) yyaE 4213283..4215286 (-) 2004 WP_129138055.1 molybdopterin-dependent oxidoreductase -
  ETK61_RS22725 (ETK61_22730) yyzM 4215337..4215543 (-) 207 WP_003226838.1 DUF951 family protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18742.31 Da        Isoelectric Point: 4.7621

>NTDB_id=340599 ETK61_RS22705 WP_003219228.1 4211099..4211617(-) (ssbA) [Bacillus subtilis strain SRCM103612]
MLNRVVLVGRLTKDPELRYTPNGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKNGGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=340599 ETK61_RS22705 WP_003219228.1 4211099..4211617(-) (ssbA) [Bacillus subtilis strain SRCM103612]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAACGGTGCGGCTGTTGC
TACGTTTACTCTTGCTGTGAATCGTACATTTACGAACCAGTCCGGAGAACGTGAGGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTCTTGAAAAAAGGAAGCCTTGCAGGCGTAGATGGCCGTTTACAAACAAGA
AACTATGAAAACCAGCAAGGACAGCGTGTCTTCGTGACAGAGGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCGAAAAA
CGGCGGCGGTTCTGGTTCAGGTGGATACAACGAAGGAAACAGCGGCGGAGGCCAGTACTTTGGCGGAGGCCAAAATGATA
ATCCATTTGGGGGAAATCAAAACAACCAGAGACGCAATCAGGGGAACAGCTTTAATGATGACCCATTTGCCAACGACGGC
AAACCGATTGACATCTCGGATGATGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A063XE16

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

100

100

1
  ssb Latilactobacillus sakei subsp. sakei 23K

58.192

100

0.599
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.628

0.395
  ssb Glaesserella parasuis strain SC1401

35.519

100

0.378

Multiple sequence alignment