Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   ETK61_RS13635 Genome accession   NZ_CP035406
Coordinates   2503939..2504370 (-) Length   143 a.a.
NCBI ID   WP_014480256.1    Uniprot ID   A0A0D1KRY1
Organism   Bacillus subtilis strain SRCM103612     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2498939..2509370
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ETK61_RS13585 (ETK61_13590) sinI 2499139..2499312 (+) 174 WP_003230187.1 anti-repressor SinI Regulator
  ETK61_RS13590 (ETK61_13595) sinR 2499346..2499681 (+) 336 WP_003226345.1 transcriptional regulator SinR Regulator
  ETK61_RS13595 (ETK61_13600) tasA 2499774..2500559 (-) 786 WP_004398632.1 biofilm matrix protein TasA -
  ETK61_RS13600 (ETK61_13605) sipW 2500623..2501195 (-) 573 WP_080031082.1 signal peptidase I SipW -
  ETK61_RS13605 (ETK61_13610) tapA 2501179..2501934 (-) 756 WP_129137785.1 amyloid fiber anchoring/assembly protein TapA -
  ETK61_RS13610 (ETK61_13615) yqzG 2502206..2502532 (+) 327 WP_003246051.1 YqzG/YhdC family protein -
  ETK61_RS13615 (ETK61_13620) spoIITA 2502574..2502753 (-) 180 WP_003230176.1 YqzE family protein -
  ETK61_RS13620 (ETK61_13625) comGG 2502824..2503198 (-) 375 WP_029726722.1 ComG operon protein ComGG Machinery gene
  ETK61_RS13625 (ETK61_13630) comGF 2503199..2503582 (-) 384 WP_029317913.1 ComG operon protein ComGF Machinery gene
  ETK61_RS13630 (ETK61_13635) comGE 2503608..2503955 (-) 348 WP_014480255.1 ComG operon protein 5 Machinery gene
  ETK61_RS13635 (ETK61_13640) comGD 2503939..2504370 (-) 432 WP_014480256.1 comG operon protein ComGD Machinery gene
  ETK61_RS13640 (ETK61_13645) comGC 2504360..2504656 (-) 297 WP_003230162.1 comG operon protein ComGC Machinery gene
  ETK61_RS13645 (ETK61_13650) comGB 2504670..2505707 (-) 1038 WP_129137786.1 comG operon protein ComGB Machinery gene
  ETK61_RS13650 (ETK61_13655) comGA 2505694..2506764 (-) 1071 WP_024573393.1 competence protein ComGA Machinery gene
  ETK61_RS13660 (ETK61_13665) corA 2507177..2508130 (-) 954 WP_017696189.1 magnesium transporter CorA -

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 16091.75 Da        Isoelectric Point: 10.1947

>NTDB_id=340566 ETK61_RS13635 WP_014480256.1 2503939..2504370(-) (comGD) [Bacillus subtilis strain SRCM103612]
MNIKLNEEKGFTLLESLLVLSLASILLIAVFTTLPPAYDNTAVRQAARQLKNDIMLTQQTAISRQQRTKILFHKKEYQLV
IGDTVIERPYATGLSIELLTLKDRLEFNEKGHPNAGGKIRVKGHAVYDITVYLGSGRVNVERK

Nucleotide


Download         Length: 432 bp        

>NTDB_id=340566 ETK61_RS13635 WP_014480256.1 2503939..2504370(-) (comGD) [Bacillus subtilis strain SRCM103612]
TTGAACATTAAATTAAACGAGGAGAAGGGGTTTACCCTTTTAGAAAGTTTGCTTGTGTTAAGCCTTGCCTCTATCCTCCT
GATTGCCGTCTTCACCACACTTCCTCCTGCTTATGACAATACAGCTGTCCGACAGGCAGCAAGGCAGCTGAAAAATGATA
TTATGCTCACACAGCAGACTGCTATTTCCCGTCAACAAAGAACAAAAATTCTCTTTCATAAAAAAGAATATCAATTAGTC
ATTGGTGATACGGTCATTGAACGTCCGTATGCAACGGGACTTTCTATAGAACTGCTGACATTAAAAGACCGTTTGGAATT
TAATGAGAAAGGGCACCCGAATGCAGGCGGAAAAATACGAGTAAAAGGCCATGCCGTTTATGACATAACAGTTTATCTAG
GGAGCGGGAGAGTCAATGTGGAGAGAAAATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(8-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0D1KRY1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Bacillus subtilis subsp. subtilis str. 168

98.601

100

0.986

Multiple sequence alignment