Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   ETK49_RS08565 Genome accession   NZ_CP035405
Coordinates   1644624..1644911 (+) Length   95 a.a.
NCBI ID   WP_003181383.1    Uniprot ID   A0A1Y0YNS3
Organism   Bacillus licheniformis strain SRCM103608     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1639624..1649911
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ETK49_RS08545 (ETK49_08545) - 1641270..1641644 (+) 375 WP_003181373.1 nuclear transport factor 2 family protein -
  ETK49_RS08550 (ETK49_08550) - 1641782..1643014 (-) 1233 WP_003181374.1 aminopeptidase -
  ETK49_RS08555 (ETK49_08555) - 1643105..1643236 (-) 132 WP_003181378.1 protein YkpC -
  ETK49_RS08560 (ETK49_08560) mreBH 1643310..1644317 (-) 1008 WP_003181381.1 rod-share determining protein MreBH -
  ETK49_RS08565 (ETK49_08565) abrB 1644624..1644911 (+) 288 WP_003181383.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  ETK49_RS08570 (ETK49_08570) - 1645079..1646416 (+) 1338 WP_003181386.1 ATP-binding protein -
  ETK49_RS08575 (ETK49_08575) - 1646481..1647143 (+) 663 WP_003181388.1 TrkA family potassium uptake protein -
  ETK49_RS08580 (ETK49_08580) ade 1647271..1648992 (+) 1722 WP_003181389.1 adenine deaminase -

Sequence

Protein


Download         Length: 95 a.a.        Molecular weight: 10554.41 Da        Isoelectric Point: 6.9823

>NTDB_id=340476 ETK49_RS08565 WP_003181383.1 1644624..1644911(+) (abrB) [Bacillus licheniformis strain SRCM103608]
MKAIGVVRKVDELGRIVMPIELRRALDISIKDSIEFFVDQDKIVLKKYKPHGVCLMTGEITSENREYGNGKITLSPEGAE
LLLEEIKAALNGVKA

Nucleotide


Download         Length: 288 bp        

>NTDB_id=340476 ETK49_RS08565 WP_003181383.1 1644624..1644911(+) (abrB) [Bacillus licheniformis strain SRCM103608]
TTGAAAGCAATAGGAGTTGTGAGAAAAGTAGACGAACTCGGCAGGATCGTGATGCCGATTGAATTGAGAAGAGCTTTGGA
TATCTCGATCAAGGACAGCATCGAATTCTTTGTCGACCAAGATAAAATCGTCCTGAAAAAATATAAACCGCACGGTGTGT
GTCTGATGACCGGTGAAATCACTTCTGAAAACCGCGAGTATGGAAACGGGAAAATTACGCTCAGTCCTGAAGGGGCCGAA
TTGCTTTTGGAAGAAATCAAAGCTGCCTTAAACGGAGTGAAAGCATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1Y0YNS3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

54.255

98.947

0.537

Multiple sequence alignment