Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   ETA15_RS21865 Genome accession   NZ_CP035403
Coordinates   4109182..4109700 (-) Length   172 a.a.
NCBI ID   WP_003219228.1    Uniprot ID   A0A063XE16
Organism   Bacillus subtilis strain SRCM103581     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4104182..4114700
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ETA15_RS21835 (ETA15_21835) yyaJ 4104689..4106046 (+) 1358 Protein_4226 MFS transporter -
  ETA15_RS21840 (ETA15_21840) maa 4106080..4106634 (-) 555 WP_017695814.1 sugar O-acetyltransferase -
  ETA15_RS21845 (ETA15_21845) yyaH 4106650..4107030 (-) 381 WP_015250784.1 VOC family protein -
  ETA15_RS21850 (ETA15_21850) ccpB 4107086..4108021 (-) 936 WP_017695815.1 transcriptional regulator CcpB -
  ETA15_RS21855 (ETA15_21855) xth 4108081..4108836 (-) 756 WP_129093551.1 exodeoxyribonuclease III -
  ETA15_RS21860 (ETA15_21860) rpsR 4108899..4109138 (-) 240 WP_003219224.1 30S ribosomal protein S18 -
  ETA15_RS21865 (ETA15_21865) ssbA 4109182..4109700 (-) 519 WP_003219228.1 single-stranded DNA-binding protein SsbA Machinery gene
  ETA15_RS21870 (ETA15_21870) rpsF 4109741..4110028 (-) 288 WP_003244064.1 30S ribosomal protein S6 -
  ETA15_RS21875 (ETA15_21875) ychF 4110139..4111239 (-) 1101 WP_003242727.1 redox-regulated ATPase YchF -
  ETA15_RS21880 (ETA15_21880) yyaE 4111366..4113369 (-) 2004 WP_014481509.1 molybdopterin-dependent oxidoreductase -
  ETA15_RS21885 (ETA15_21885) yyzM 4113420..4113626 (-) 207 WP_003226838.1 DUF951 family protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18742.31 Da        Isoelectric Point: 4.7621

>NTDB_id=340372 ETA15_RS21865 WP_003219228.1 4109182..4109700(-) (ssbA) [Bacillus subtilis strain SRCM103581]
MLNRVVLVGRLTKDPELRYTPNGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKNGGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=340372 ETA15_RS21865 WP_003219228.1 4109182..4109700(-) (ssbA) [Bacillus subtilis strain SRCM103581]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAACGGTGCGGCTGTTGC
TACGTTTACTCTTGCTGTGAATCGTACATTTACGAACCAGTCCGGAGAACGTGAGGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTCTTGAAAAAAGGAAGCCTTGCAGGCGTAGATGGCCGTTTACAAACAAGA
AACTATGAAAACCAGCAAGGACAGCGTGTCTTCGTGACAGAGGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCGAAAAA
CGGCGGCGGTTCTGGTTCAGGTGGATACAACGAAGGAAACAGCGGCGGAGGCCAGTACTTTGGCGGAGGCCAAAATGATA
ATCCATTTGGGGGAAATCAAAACAACCAGAGACGCAATCAGGGGAACAGCTTTAATGATGACCCATTTGCCAACGACGGC
AAACCGATTGACATCTCGGATGATGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A063XE16

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

100

100

1
  ssb Latilactobacillus sakei subsp. sakei 23K

58.192

100

0.599
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.628

0.395
  ssb Glaesserella parasuis strain SC1401

35.519

100

0.378

Multiple sequence alignment