Detailed information NTG0034037

Bioinformatically predicted

Overview

• Name: ruvB
• Type: Machinery gene
• Locus tag: PGTDC60_RS07095
• Genome accession: NC_015571
• Coordinates: 1668489..1669520 (+)
• Length: 343 a.a.
• NCBI ID: WP_043890099.1
• Uniprot ID: -
• Organism: Porphyromonas gingivalis TDC60
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1663489..1674520

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PGTDC60_RS07070 (PGTDC60_1598)	-	1664367..1664798 (-)	432	WP_013816254.1	DUF5606 domain-containing protein	-
PGTDC60_RS07075 (PGTDC60_1599)	coaE	1664905..1665513 (-)	609	WP_013816255.1	dephospho-CoA kinase	-
PGTDC60_RS07080 (PGTDC60_1600)	-	1665520..1666527 (-)	1008	WP_004585013.1	YbbR-like domain-containing protein	-
PGTDC60_RS07085 (PGTDC60_1601)	yajC	1666655..1666993 (-)	339	WP_004585014.1	preprotein translocase subunit YajC	-
PGTDC60_RS07090 (PGTDC60_1602)	-	1667076..1667588 (-)	513	WP_043890192.1	methylated-DNA--[protein]-cysteine S-methyltransferase	-
PGTDC60_RS07095 (PGTDC60_1603)	ruvB	1668489..1669520 (+)	1032	WP_043890099.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
PGTDC60_RS07100 (PGTDC60_1604)	-	1669543..1671048 (+)	1506	WP_043890100.1	lipopolysaccharide biosynthesis protein	-
PGTDC60_RS07105 (PGTDC60_1605)	-	1671070..1672488 (+)	1419	WP_013816259.1	DUF389 domain-containing protein	-

Sequence

Protein

• Length: 343 a.a.
• Molecular weight: 37753.99 Da
• Isoelectric Point: 5.8564

>NTDB_id=34037 PGTDC60_RS07095 WP_043890099.1 1668489..1669520(+) (ruvB) [Porphyromonas gingivalis TDC60]
MTEEFDIRQERYRGNDGEREVENKLRPLTFDSFSGQDKVVENLSIFVAAARLRGEALDHTLLHGPPGLGKTTLSNIIANE
LGVGLKITSGPVLDKPGDLAGLLTSLESNDVLFIDEIHRLSPLVEEYLYSAMEDYRIDIMLDKGPSARSIQINLSPFTLV
GATTRSGLLTAPLRARFGINLHLEYYDVHTITGIVERSARILEVSCSHDAAVEIAGRSRGTPRIANALLRRVRDFAQVKG
SGAIDKPIACYALEALNIDRYGLDNVDHKLLATIIDKFAGGPVGLSTIATALGEDPGTIEEVYEPFLIKEGFLKRTPRGR
EVTELAYTHLGRNPRPHRPSLFD

Nucleotide

• Length: 1032 bp

>NTDB_id=34037 PGTDC60_RS07095 WP_043890099.1 1668489..1669520(+) (ruvB) [Porphyromonas gingivalis TDC60]
ATGACTGAAGAATTTGACATTAGACAGGAGCGTTACCGCGGCAACGACGGCGAACGGGAAGTCGAAAACAAGCTACGCCC
CCTGACGTTCGACAGCTTTAGCGGTCAGGACAAGGTGGTGGAGAATCTGAGCATCTTCGTTGCTGCAGCTCGTTTGCGCG
GCGAGGCCTTGGATCATACGCTGCTGCATGGCCCTCCGGGGCTGGGTAAGACCACGCTGTCGAATATCATAGCCAATGAG
CTTGGCGTGGGGCTTAAGATCACTTCCGGTCCCGTCCTCGACAAGCCGGGTGATCTGGCCGGACTCCTCACTTCGTTGGA
ATCCAACGATGTACTTTTCATAGACGAAATACACCGGCTGAGCCCTCTGGTGGAAGAATATCTCTACTCGGCCATGGAAG
ACTATCGTATAGATATAATGCTGGACAAGGGACCCAGCGCGCGCTCCATTCAGATCAATCTCTCCCCCTTCACCCTTGTG
GGAGCTACTACGCGCAGCGGTTTGCTGACAGCACCCCTTCGTGCTCGTTTCGGGATCAATCTCCATCTGGAGTATTACGA
TGTGCATACTATTACCGGTATCGTGGAGCGGAGTGCACGCATTCTGGAGGTGTCCTGTTCGCACGATGCGGCCGTAGAGA
TAGCGGGACGAAGCCGTGGTACGCCTCGTATAGCCAATGCCTTGCTGCGACGTGTAAGGGACTTTGCACAGGTCAAGGGA
TCCGGTGCCATTGACAAACCGATAGCCTGCTATGCTCTCGAAGCCCTGAATATCGACCGCTACGGGCTGGACAATGTGGA
TCACAAGCTCCTCGCCACCATCATAGACAAGTTCGCCGGAGGCCCCGTCGGATTGAGCACCATTGCCACGGCCTTGGGGG
AAGACCCCGGTACGATAGAGGAGGTCTATGAGCCATTCCTTATCAAGGAGGGATTCCTCAAGCGGACACCTCGCGGAAGA
GAAGTGACGGAGCTGGCTTATACGCACTTGGGACGTAACCCCCGTCCGCACCGGCCATCCCTCTTCGACTGA

Domains

Predicted by InterProScan.

• RuvB C-terminal winged helix domain (WHD_RuvB) (261-330)

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (25-183)

• RuvB AAA lid domain (AAA_lid_4) (186-259)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ruvB	Bacillus subtilis subsp. subtilis str. 168	58.675	92.42	0.542
ruvB	Streptococcus pneumoniae TIGR4	58.28	91.545	0.534
ruvB	Streptococcus pneumoniae R6	58.28	91.545	0.534
ruvB	Streptococcus pneumoniae D39	58.28	91.545	0.534
ruvB	Synechocystis sp. PCC 6803	52.744	95.627	0.504
ruvB	Helicobacter pylori 26695	50.325	89.796	0.452