Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   ETA18_RS21540 Genome accession   NZ_CP035400
Coordinates   4126501..4127019 (-) Length   172 a.a.
NCBI ID   WP_003219228.1    Uniprot ID   A0A063XE16
Organism   Bacillus subtilis strain SRCM103835     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4121501..4132019
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ETA18_RS21510 (ETA18_21510) yyaJ 4122003..4123358 (+) 1356 WP_014481501.1 MFS transporter -
  ETA18_RS21515 (ETA18_21515) maa 4123392..4123946 (-) 555 WP_032722825.1 sugar O-acetyltransferase -
  ETA18_RS21520 (ETA18_21520) yyaH 4123964..4124344 (-) 381 WP_128993626.1 VOC family protein -
  ETA18_RS21525 (ETA18_21525) ccpB 4124400..4125335 (-) 936 WP_024571353.1 transcriptional regulator CcpB -
  ETA18_RS21530 (ETA18_21530) xth 4125395..4126153 (-) 759 WP_003226843.1 exodeoxyribonuclease III -
  ETA18_RS21535 (ETA18_21535) rpsR 4126218..4126457 (-) 240 WP_003219224.1 30S ribosomal protein S18 -
  ETA18_RS21540 (ETA18_21540) ssbA 4126501..4127019 (-) 519 WP_003219228.1 single-stranded DNA-binding protein SsbA Machinery gene
  ETA18_RS21545 (ETA18_21545) rpsF 4127060..4127347 (-) 288 WP_003236622.1 30S ribosomal protein S6 -
  ETA18_RS21550 (ETA18_21550) ychF 4127458..4128558 (-) 1101 WP_003242727.1 redox-regulated ATPase YchF -
  ETA18_RS21555 (ETA18_21555) yyaE 4128685..4130688 (-) 2004 WP_128993627.1 molybdopterin-dependent oxidoreductase -
  ETA18_RS21560 (ETA18_21560) yyzM 4130739..4130945 (-) 207 WP_003226838.1 DUF951 family protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18742.31 Da        Isoelectric Point: 4.7621

>NTDB_id=340136 ETA18_RS21540 WP_003219228.1 4126501..4127019(-) (ssbA) [Bacillus subtilis strain SRCM103835]
MLNRVVLVGRLTKDPELRYTPNGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKNGGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=340136 ETA18_RS21540 WP_003219228.1 4126501..4127019(-) (ssbA) [Bacillus subtilis strain SRCM103835]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAACGGTGCGGCTGTTGC
TACGTTTACTCTTGCTGTGAATCGTACATTTACGAACCAGTCCGGAGAACGTGAGGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTCTTGAAAAAAGGAAGCCTTGCAGGCGTAGATGGCCGTTTACAAACAAGA
AACTATGAAAACCAGCAAGGACAGCGTGTCTTCGTGACAGAGGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCGAAAAA
CGGCGGCGGTTCTGGTTCAGGTGGATACAACGAAGGAAACAGCGGCGGAGGCCAGTACTTTGGCGGAGGCCAAAATGATA
ATCCATTTGGGGGAAATCAAAACAACCAGAGACGCAATCAGGGGAACAGCTTTAATGATGACCCATTTGCCAACGACGGC
AAACCGATTGACATCTCGGATGATGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A063XE16

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

100

100

1
  ssb Latilactobacillus sakei subsp. sakei 23K

58.192

100

0.599
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.628

0.395
  ssb Glaesserella parasuis strain SC1401

35.519

100

0.378

Multiple sequence alignment