Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvB   Type   Machinery gene
Locus tag   F3K22_RS07445 Genome accession   NZ_CP043958
Coordinates   1793018..1794088 (-) Length   356 a.a.
NCBI ID   WP_013005007.1    Uniprot ID   C9Z643
Organism   Streptomyces sp. LBUM 1475     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1788018..1799088
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F3K22_RS07425 (F3K22_07515) - 1788753..1789292 (-) 540 WP_013005011.1 adenine phosphoribosyltransferase -
  F3K22_RS07430 (F3K22_07520) secF 1789289..1790395 (-) 1107 WP_013005010.1 protein translocase subunit SecF -
  F3K22_RS07435 (F3K22_07525) secD 1790397..1792172 (-) 1776 WP_013005009.1 protein translocase subunit SecD -
  F3K22_RS07440 (F3K22_07530) yajC 1792304..1792843 (-) 540 WP_013005008.1 preprotein translocase subunit YajC -
  F3K22_RS07445 (F3K22_07535) ruvB 1793018..1794088 (-) 1071 WP_013005007.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  F3K22_RS07450 (F3K22_07540) ruvA 1794168..1794773 (-) 606 WP_013005006.1 Holliday junction branch migration protein RuvA -
  F3K22_RS07455 (F3K22_07545) ruvC 1794770..1795300 (-) 531 WP_013005005.1 crossover junction endodeoxyribonuclease RuvC -
  F3K22_RS07460 (F3K22_07550) - 1795416..1796168 (-) 753 WP_013005004.1 YebC/PmpR family DNA-binding transcriptional regulator -
  F3K22_RS07465 (F3K22_07555) pdxT 1796218..1796826 (-) 609 WP_013005003.1 pyridoxal 5'-phosphate synthase glutaminase subunit PdxT -
  F3K22_RS07470 (F3K22_07560) pdxS 1796833..1797747 (-) 915 WP_037725669.1 pyridoxal 5'-phosphate synthase lyase subunit PdxS -
  F3K22_RS07475 (F3K22_07565) - 1798061..1798606 (-) 546 WP_037725772.1 membrane protein -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 38118.41 Da        Isoelectric Point: 4.7645

>NTDB_id=339942 F3K22_RS07445 WP_013005007.1 1793018..1794088(-) (ruvB) [Streptomyces sp. LBUM 1475]
MNWDDTTDDTAAERLVGSVADREDQAVEAALRPKDLGEFIGQEKVREQLDLVLRAARARGATADHVLLSGAPGLGKTTLS
MIIAAEMGAPIRITSGPAIQHAGDLAAILSSLQEGEVLFLDEIHRMSRPAEEMLYMAMEDFRVDVIVGKGPGATAIPLEL
PPFTLVGATTRAGLLPPPLRDRFGFTAHMEFYEPAELERVIHRSANLLDVEIDTDGAAEIAGRSRGTPRIANRLLRRVRD
YAQVKADGFITRDIAGAALAVYEVDARGLDRLDRGVLEALLKLFGGGPVGLSTLAVAVGEERETVEEVAEPFLVREGLLA
RTPRGRVATPAAWAHLGLTPPRGTTGGNGQQDLFGA

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=339942 F3K22_RS07445 WP_013005007.1 1793018..1794088(-) (ruvB) [Streptomyces sp. LBUM 1475]
ATGAACTGGGACGACACGACCGACGACACCGCCGCCGAGAGGCTGGTGGGCTCCGTCGCCGACCGTGAGGACCAGGCCGT
CGAGGCCGCCCTGCGCCCGAAGGACCTGGGGGAGTTCATCGGCCAGGAGAAGGTCCGTGAACAGCTCGACCTGGTCCTGC
GGGCCGCACGCGCGCGAGGTGCCACCGCCGACCACGTGCTGCTCTCCGGCGCCCCCGGCCTCGGCAAGACCACCCTCTCG
ATGATCATCGCGGCCGAGATGGGCGCCCCCATCCGGATCACCTCCGGCCCCGCCATCCAGCACGCCGGCGACCTCGCCGC
GATCCTCTCCTCCCTCCAGGAGGGCGAGGTCCTCTTCCTCGACGAGATCCACCGCATGTCCCGGCCCGCCGAGGAGATGC
TCTACATGGCGATGGAGGACTTCCGTGTCGACGTGATCGTCGGCAAGGGCCCCGGCGCCACCGCCATCCCCCTCGAACTG
CCGCCCTTCACCCTGGTCGGCGCCACCACGCGTGCGGGACTGCTGCCCCCGCCGCTGCGCGACCGCTTCGGCTTCACCGC
GCACATGGAGTTCTACGAGCCCGCCGAGCTGGAGCGGGTGATCCATCGCTCGGCGAACCTCCTCGACGTCGAGATCGACA
CGGACGGCGCCGCCGAGATCGCGGGCCGCTCCCGCGGCACCCCCCGTATCGCCAACCGCCTGCTGCGCCGCGTACGGGAC
TACGCGCAGGTCAAGGCCGACGGCTTCATCACCCGCGACATCGCCGGGGCCGCCCTCGCCGTCTACGAGGTGGACGCCCG
GGGCCTCGACCGCCTGGACCGGGGCGTCCTCGAAGCCCTGCTCAAGCTCTTCGGCGGCGGACCGGTCGGTCTCTCCACGC
TCGCGGTCGCGGTGGGGGAGGAGCGTGAGACCGTGGAGGAGGTGGCCGAGCCCTTCCTCGTCCGGGAGGGACTGCTCGCC
CGGACCCCCCGCGGCCGGGTCGCGACCCCCGCCGCCTGGGCCCACCTCGGACTCACCCCGCCACGCGGTACGACCGGGGG
AAACGGACAACAGGACCTGTTCGGGGCGTGA

Domains

Predicted by InterProScan.

RuvB C-terminal winged helix domain (WHD_RuvB)

(267-336)

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(31-189)

RuvB AAA lid domain (AAA_lid_4)

(192-265)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB C9Z643

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvB Bacillus subtilis subsp. subtilis str. 168

55.455

92.697

0.514
  ruvB Synechocystis sp. PCC 6803

54.14

88.202

0.478
  ruvB Streptococcus pneumoniae TIGR4

53.016

88.483

0.469
  ruvB Streptococcus pneumoniae R6

53.016

88.483

0.469
  ruvB Streptococcus pneumoniae D39

53.016

88.483

0.469
  ruvB Helicobacter pylori 26695

50.314

89.326

0.449

Multiple sequence alignment