Detailed information NTG0339869

Bioinformatically predicted

Overview

• Name: clpX
• Type: Regulator
• Locus tag: F3K21_RS14420
• Genome accession: NZ_CP043957
• Coordinates: 3400515..3401801 (-)
• Length: 428 a.a.
• NCBI ID: WP_013003579.1
• Uniprot ID: C9Z7F2
• Organism: Streptomyces sp. LBUM 1480
• Function: require for competence development (predicted from homology) Competence regulation

Genomic Context

Location: 3395515..3406801

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
F3K21_RS14405 (F3K21_14530)	-	3396272..3398902 (-)	2631	WP_210524597.1	valine--tRNA ligase	-
F3K21_RS14410 (F3K21_14535)	-	3399040..3399999 (+)	960	WP_013003581.1	membrane protein	-
F3K21_RS14415 (F3K21_14540)	-	3400078..3400344 (-)	267	WP_037729633.1	hypothetical protein	-
F3K21_RS14420 (F3K21_14545)	clpX	3400515..3401801 (-)	1287	WP_013003579.1	ATP-dependent Clp protease ATP-binding subunit ClpX	Regulator
F3K21_RS14425 (F3K21_14550)	clpP	3402005..3402685 (-)	681	WP_013003578.1	ATP-dependent Clp protease proteolytic subunit	Regulator
F3K21_RS14430 (F3K21_14555)	clpP	3402768..3403379 (-)	612	WP_037729632.1	ATP-dependent Clp protease proteolytic subunit	Regulator
F3K21_RS14435 (F3K21_14560)	tig	3403783..3405183 (-)	1401	WP_013003576.1	trigger factor	-
F3K21_RS14450 (F3K21_14575)	-	3405831..3406025 (-)	195	WP_033526477.1	hypothetical protein	-

Sequence

Protein

• Length: 428 a.a.
• Molecular weight: 46873.74 Da
• Isoelectric Point: 4.8317

>NTDB_id=339869 F3K21_RS14420 WP_013003579.1 3400515..3401801(-) (clpX) [Streptomyces sp. LBUM 1480]
MARIGDGGDLLKCSFCGKSQKQVKKLIAGPGVYICDECIDLCNEIIEEELAETSEVRWEELPKPREIYEFLEGYVVGQEA
AKKALSVAVYNHYKRVQAGENGGGQSREDAIELAKSNILLLGPTGSGKTLLAQTLARMLNVPFAIADATALTEAGYVGED
VENILLKLIQAADYDVKKAETGIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPHQEFIQ
IDTTNVLFIVGGAFSGLEKIIESRAGAKGIGFGATIRSKRELESKDQFEAVMPEDLVKFGMIPEFIGRLPVITSVHNLDR
EALLQILIEPRNALVKQYQRLFELDGVELDFEREALEAIADQAILRQTGARGLRAIMEEVLMSVMYEVPSRKDVARVVIT
ADVVRSNVNPTLIPRDARGRGPGEQKTA

Nucleotide

• Length: 1287 bp

>NTDB_id=339869 F3K21_RS14420 WP_013003579.1 3400515..3401801(-) (clpX) [Streptomyces sp. LBUM 1480]
GTGGCACGCATCGGTGACGGCGGCGATCTGCTCAAGTGCTCGTTCTGCGGCAAGAGCCAGAAGCAGGTCAAGAAGCTCAT
CGCAGGGCCCGGTGTGTACATCTGCGACGAGTGCATCGACCTCTGCAACGAGATCATCGAGGAAGAACTCGCGGAGACCA
GTGAGGTCCGCTGGGAGGAACTCCCGAAGCCCCGCGAGATCTACGAGTTCCTCGAGGGCTACGTGGTGGGCCAGGAGGCG
GCCAAGAAGGCGCTCTCCGTGGCCGTGTACAACCACTACAAGCGCGTCCAGGCCGGTGAGAACGGCGGCGGTCAAAGCCG
TGAGGACGCCATCGAGTTGGCGAAGTCCAACATCCTGCTGCTGGGCCCCACGGGCTCGGGCAAGACCCTCCTCGCCCAGA
CCCTCGCGCGCATGCTGAACGTCCCGTTCGCGATCGCGGACGCGACGGCGCTGACGGAGGCGGGGTATGTCGGCGAGGAC
GTCGAGAACATCCTGCTGAAGCTCATCCAGGCGGCCGACTACGACGTCAAGAAGGCCGAGACCGGGATCATCTACATCGA
CGAGATCGACAAGGTCGCGCGGAAGAGTGAAAACCCCTCCATCACACGTGACGTGTCGGGCGAGGGCGTCCAGCAGGCCC
TGTTGAAGATCCTGGAGGGCACCACGGCGTCGGTCCCGCCGCAGGGCGGCCGTAAGCACCCGCACCAGGAGTTCATCCAG
ATCGACACGACGAACGTCCTGTTCATCGTGGGCGGCGCCTTCTCCGGCCTGGAGAAGATCATCGAATCCCGGGCCGGCGC
GAAGGGCATCGGCTTCGGCGCGACGATCCGCTCCAAGCGCGAGCTGGAGTCCAAGGACCAGTTCGAGGCCGTCATGCCGG
AGGACCTGGTCAAGTTCGGCATGATCCCGGAGTTCATCGGCCGTCTGCCCGTCATCACCTCGGTCCACAACCTGGACCGT
GAGGCACTGCTCCAGATCCTCATCGAGCCGCGCAACGCGCTGGTGAAGCAGTACCAGCGCCTGTTCGAACTCGACGGCGT
GGAGCTGGACTTCGAGCGCGAGGCCCTCGAAGCCATCGCCGACCAGGCCATCCTCCGCCAGACCGGCGCGCGCGGCCTGC
GCGCCATCATGGAGGAGGTCCTGATGTCGGTCATGTACGAGGTCCCGTCCCGCAAGGACGTCGCCCGAGTCGTCATCACG
GCCGACGTGGTCCGCTCCAACGTCAACCCGACCCTGATCCCCCGGGACGCGCGGGGGCGGGGACCGGGGGAGCAGAAGAC
GGCGTAG

Domains

Predicted by InterProScan.

• AAA domain (Cdc48 subfamily) (AAA_2) (115-312)

• ClpX C4-type zinc finger (zf-C4_ClpX) (11-48)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (318-395)

3D structure

• AlphaFold DB: C9Z7F2

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpX	Streptococcus mutans UA159	62.687	93.925	0.589
clpX	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	54.501	96.028	0.523