Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   F3K21_RS13665 Genome accession   NZ_CP043957
Coordinates   3214975..3216909 (+) Length   644 a.a.
NCBI ID   WP_037726465.1    Uniprot ID   -
Organism   Streptomyces sp. LBUM 1480     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3209975..3221909
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F3K21_RS13650 (F3K21_13760) - 3211207..3211512 (+) 306 WP_037726468.1 hypothetical protein -
  F3K21_RS13655 (F3K21_13765) - 3211582..3213036 (+) 1455 WP_013003831.1 FGGY family carbohydrate kinase -
  F3K21_RS13660 (F3K21_13770) rcrP 3213242..3214975 (+) 1734 WP_037726466.1 ABC transporter ATP-binding protein Regulator
  F3K21_RS13665 (F3K21_13775) rcrQ 3214975..3216909 (+) 1935 WP_037726465.1 ABC transporter ATP-binding protein Regulator
  F3K21_RS13670 (F3K21_13780) - 3217009..3218334 (-) 1326 WP_060904682.1 RNA polymerase sigma factor -
  F3K21_RS13675 (F3K21_13785) dnaG 3218548..3220449 (-) 1902 WP_061335393.1 DNA primase -
  F3K21_RS13680 (F3K21_13790) - 3220564..3221829 (-) 1266 WP_060904684.1 FAD-dependent oxidoreductase -

Sequence

Protein


Download         Length: 644 a.a.        Molecular weight: 69519.89 Da        Isoelectric Point: 5.2188

>NTDB_id=339868 F3K21_RS13665 WP_037726465.1 3214975..3216909(+) (rcrQ) [Streptomyces sp. LBUM 1480]
MAGPLARMAGAGAPDQHSMDFKGSGKRLLAQFRPERFTMYAMIVCAVLSVGLSVLGPYILGRATDLVFAGVVGREMPAGA
TKAEVLASMRERGDGAVADMLSGTDFTPGKGIDFDAVGTVLLVALGIFLVAGLLMAAATRLSNRAINRTVYHMREELQAK
LSRLPLAYFDRRQRGEVLSRATNDLDNIGQTLQQSMGQLVNSLLTIIGVLVMMFWVSPLLALVALVTVPVSFLVATRVGK
RSQPHFVAQWRVTGKLNAHIEEMYTGHTLVKVFGRQEESAKQFAEENERLYEAGFKAQFNSGIMQPLMFFVSNINYVLVA
VVGGLRVATGALSIGDVQAFIQYSRQFSMPLTQVASMANLVQSGVASAERIFELLDAEEQEADAVPGVRPEELRGRVALE
NVSFRYEADKPLIEDLSLAVEPGHTVAIVGPTGAGKTTLVNLLMRFYEVTGGRITLDGVDIASMSRDELRDGIGMVLQDT
WLFGGTIAENIAYGASASRKVTRGEIEEAARAAHADRFVRTLPDGYDTVIDDEGSGVSAGEKQLITIARAFLSDPVILVL
DEATSSVDTRTEVLIQKAMAKLAHGRTSFVIAHRLSTIRDADTILVMENGAIVEQGAHEELLAADGAYARLYKAQFAEAV
AEVD

Nucleotide


Download         Length: 1935 bp        

>NTDB_id=339868 F3K21_RS13665 WP_037726465.1 3214975..3216909(+) (rcrQ) [Streptomyces sp. LBUM 1480]
ATGGCCGGGCCGTTGGCACGGATGGCGGGGGCCGGGGCCCCCGACCAGCACTCCATGGACTTCAAGGGGTCCGGGAAACG
GCTGCTGGCGCAGTTCAGGCCCGAGCGCTTCACCATGTACGCGATGATCGTGTGCGCGGTGCTCAGCGTCGGTCTGTCGG
TGCTGGGGCCCTACATTCTGGGCCGGGCGACCGACCTCGTCTTCGCGGGGGTCGTCGGGCGGGAGATGCCGGCGGGCGCG
ACGAAGGCCGAGGTGCTGGCCTCCATGCGCGAGCGCGGGGACGGCGCGGTCGCCGACATGCTGTCGGGCACGGACTTCAC
GCCCGGCAAGGGCATCGATTTCGACGCCGTCGGCACGGTGCTGCTGGTTGCCCTCGGCATCTTCCTGGTCGCGGGGCTGC
TGATGGCGGCGGCGACCCGGCTCTCCAACCGGGCGATCAACCGGACCGTCTACCACATGCGCGAGGAGCTGCAGGCGAAG
CTGTCGCGGCTGCCGCTGGCGTACTTCGACCGGCGGCAGCGCGGTGAGGTGCTGAGCCGGGCGACCAACGACCTCGACAA
CATCGGCCAGACGCTCCAGCAGTCGATGGGGCAGCTGGTCAACTCGCTGCTCACCATCATCGGCGTGCTGGTGATGATGT
TCTGGGTGTCGCCGCTGCTGGCGCTGGTCGCGCTGGTGACCGTGCCGGTGTCGTTCCTGGTGGCCACGCGGGTCGGCAAG
CGGTCGCAGCCGCACTTCGTGGCGCAGTGGCGGGTGACGGGCAAGCTCAACGCGCACATCGAGGAGATGTACACCGGGCA
CACGCTCGTGAAGGTGTTCGGGCGGCAGGAGGAGTCGGCGAAGCAGTTCGCCGAGGAGAACGAGCGGCTGTACGAGGCCG
GGTTCAAGGCCCAGTTCAACAGCGGGATCATGCAGCCGCTGATGTTCTTCGTGTCGAACATCAACTACGTGCTCGTCGCG
GTGGTGGGCGGACTGCGGGTGGCCACGGGTGCCCTGTCCATCGGTGACGTGCAGGCGTTCATCCAGTACTCGCGGCAGTT
CTCGATGCCGCTGACGCAGGTCGCCTCGATGGCGAACCTGGTGCAGTCCGGCGTCGCCTCGGCCGAGCGGATCTTCGAAC
TGCTCGACGCGGAGGAGCAGGAGGCCGACGCGGTGCCCGGCGTGCGGCCGGAGGAGCTGCGGGGGCGGGTCGCGCTGGAG
AACGTCTCCTTCCGGTACGAGGCCGACAAGCCGCTGATCGAGGATCTGTCGCTGGCGGTCGAGCCGGGGCACACGGTCGC
GATCGTGGGGCCGACGGGCGCGGGAAAGACCACGCTCGTCAACCTGTTGATGCGGTTCTACGAGGTCACCGGGGGGCGGA
TCACGCTCGACGGCGTCGACATCGCGTCCATGTCGCGGGACGAACTGCGGGACGGGATAGGGATGGTGCTCCAGGACACC
TGGCTGTTCGGCGGGACCATCGCGGAGAACATCGCGTACGGGGCGTCCGCGTCGCGGAAGGTGACGCGGGGGGAGATCGA
GGAGGCGGCCCGGGCCGCGCACGCGGACCGGTTCGTGCGGACGTTGCCGGACGGGTACGACACCGTGATCGACGACGAGG
GGTCCGGGGTGAGCGCGGGTGAGAAGCAGCTCATCACGATCGCCCGGGCGTTCCTGTCGGATCCGGTGATCCTGGTGCTG
GACGAGGCGACGTCCTCGGTGGACACGCGTACGGAGGTGTTGATCCAGAAGGCGATGGCCAAGTTGGCGCACGGGCGGAC
CTCGTTCGTGATCGCGCACCGGCTGTCGACGATCCGGGACGCGGACACGATCCTGGTGATGGAGAACGGGGCCATCGTGG
AGCAGGGGGCGCACGAGGAGTTGCTGGCGGCGGACGGGGCGTATGCGCGGCTGTACAAGGCGCAGTTCGCGGAGGCGGTG
GCCGAGGTGGACTGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(414-565)

ABC transporter transmembrane region (ABC_membrane)

(41-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

40.645

96.273

0.391

Multiple sequence alignment