Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   F3K21_RS13660 Genome accession   NZ_CP043957
Coordinates   3213242..3214975 (+) Length   577 a.a.
NCBI ID   WP_037726466.1    Uniprot ID   -
Organism   Streptomyces sp. LBUM 1480     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3208242..3219975
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F3K21_RS13625 (F3K21_13735) - 3208821..3209237 (-) 417 WP_013003835.1 helix-turn-helix domain-containing protein -
  F3K21_RS13630 (F3K21_13740) - 3209652..3210128 (+) 477 WP_246890405.1 nitroreductase/quinone reductase family protein -
  F3K21_RS13650 (F3K21_13760) - 3211207..3211512 (+) 306 WP_037726468.1 hypothetical protein -
  F3K21_RS13655 (F3K21_13765) - 3211582..3213036 (+) 1455 WP_013003831.1 FGGY family carbohydrate kinase -
  F3K21_RS13660 (F3K21_13770) rcrP 3213242..3214975 (+) 1734 WP_037726466.1 ABC transporter ATP-binding protein Regulator
  F3K21_RS13665 (F3K21_13775) rcrQ 3214975..3216909 (+) 1935 WP_037726465.1 ABC transporter ATP-binding protein Regulator
  F3K21_RS13670 (F3K21_13780) - 3217009..3218334 (-) 1326 WP_060904682.1 RNA polymerase sigma factor -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62999.18 Da        Isoelectric Point: 5.5841

>NTDB_id=339867 F3K21_RS13660 WP_037726466.1 3213242..3214975(+) (rcrP) [Streptomyces sp. LBUM 1480]
MLIRLLRSHLRPYRTPITLLVLLQFVQTCATLYLPTLNADIIDKGVVEGDTGYILSFGALMVGISLVQVVCNIGAVYYGA
RTASAVGRDIRAAVFDRVQSFSAREVGHFGAPSLITRTTNDVQQVQMLVLMTFTLVVSAPIMCVGGIVLALGLDVPLSGV
LLAVVPVLGISVSLIVRRLRPLFRAMQERLDTVNRVLREQITGNRVIRAFVRDDYEKDRFRKANAELTEVSLGTGRMLAL
MFPIVMTVINLSSIAVVWFGAHRIDSGGMEIGALTAFLAYLMQIVMAVMMATFMFMMMPRAEVCAERIQEVLDTDTSVVP
PVAPVRELRRHGFLEVRGAGFRYPGAEEPVLRSIEVVARPGETTAVIGSTGSGKSTLLGLVPRLFDVTEGEVLVDGVDVR
TLDPQLLARTVGLVPQKPYLFSGTVATNLRYGNPDATDEELWHALEVAQAREFVERLENGLDSPIAQGGTNVSGGQRQRL
AIARTLVQRPEIYLFDDSFSALDYATDAALRAALGRETADATVVIVAQRVATIRDADRIVVLDEGRVVGTGRHQELMADN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=339867 F3K21_RS13660 WP_037726466.1 3213242..3214975(+) (rcrP) [Streptomyces sp. LBUM 1480]
GTGCTCATACGATTGCTGAGAAGTCATCTCCGTCCTTACCGGACACCGATCACCCTGCTGGTGCTGCTGCAGTTCGTGCA
GACGTGCGCCACGCTCTACCTGCCCACACTGAACGCGGACATCATCGACAAGGGCGTGGTGGAGGGGGACACGGGCTACA
TCCTGTCCTTCGGCGCGCTGATGGTCGGCATCTCGCTGGTGCAGGTCGTCTGCAACATCGGGGCCGTGTACTACGGCGCC
CGCACCGCCTCGGCGGTCGGCCGGGACATCCGGGCGGCCGTGTTCGACCGGGTCCAGTCGTTCTCGGCGCGTGAGGTCGG
TCACTTCGGGGCCCCGTCGCTGATCACGCGGACGACGAACGACGTGCAGCAGGTGCAGATGCTGGTGCTCATGACGTTCA
CGCTGGTGGTGTCGGCGCCGATCATGTGCGTCGGCGGCATCGTGCTGGCGCTCGGGCTGGACGTGCCGCTGTCGGGGGTA
CTGCTCGCCGTCGTACCGGTGCTCGGCATCTCGGTCAGCCTGATCGTGCGGCGGCTGCGCCCCCTGTTCCGTGCCATGCA
GGAGCGGCTGGACACCGTGAACCGGGTGCTGCGGGAGCAGATCACCGGCAACCGGGTGATCCGCGCGTTCGTGCGGGACG
ACTACGAGAAGGACCGGTTCCGGAAGGCGAACGCCGAGCTGACGGAGGTGTCCCTCGGTACCGGGCGGATGCTCGCGCTG
ATGTTCCCGATCGTGATGACCGTCATCAACCTGTCGTCGATCGCGGTGGTGTGGTTCGGTGCCCATCGCATCGACAGCGG
CGGGATGGAGATCGGCGCGCTCACCGCGTTCCTCGCCTATCTGATGCAGATCGTGATGGCCGTGATGATGGCCACCTTCA
TGTTCATGATGATGCCGCGCGCGGAGGTGTGCGCCGAGCGCATCCAGGAGGTGCTCGACACCGACACCAGTGTGGTGCCG
CCGGTCGCGCCCGTCCGGGAGCTGCGCAGGCACGGGTTCCTTGAGGTGCGGGGCGCGGGCTTCCGCTATCCGGGCGCCGA
GGAGCCGGTCCTCCGGTCGATCGAGGTCGTCGCACGGCCCGGCGAGACGACCGCCGTGATCGGGTCCACGGGCAGCGGGA
AGTCCACGCTGCTGGGGCTCGTCCCCCGGCTCTTCGACGTCACCGAGGGCGAGGTGCTGGTGGACGGCGTCGACGTACGG
ACGCTCGATCCGCAGCTGCTGGCCAGGACCGTGGGGCTGGTGCCGCAGAAGCCGTACCTGTTCTCGGGGACCGTGGCGAC
GAACCTGCGGTACGGCAATCCCGACGCCACCGACGAGGAGTTGTGGCACGCGCTGGAGGTGGCGCAGGCCAGGGAGTTCG
TGGAGCGGCTGGAGAACGGGCTGGACTCCCCCATCGCACAGGGCGGGACGAACGTGTCCGGCGGCCAGCGGCAGCGGCTC
GCGATCGCGCGGACGCTGGTGCAGCGGCCCGAGATCTATCTGTTCGACGACTCCTTCTCCGCGCTGGACTACGCGACCGA
CGCCGCCCTGCGCGCGGCGCTGGGGCGGGAGACCGCCGACGCGACCGTGGTGATCGTGGCCCAGCGGGTGGCGACCATCC
GGGACGCCGACCGGATCGTGGTCCTCGATGAGGGCCGGGTCGTCGGCACCGGACGCCACCAGGAGCTGATGGCGGACAAC
GAGACGTACCGGGAGATCGTCCTCTCCCAGCTCACGGAAGCGGAGGCAGCCTGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(352-498)

ABC transporter transmembrane region (ABC_membrane)

(18-288)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

39.254

97.574

0.383

Multiple sequence alignment