Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   ES965_RS21230 Genome accession   NZ_CP035391
Coordinates   4079332..4079850 (-) Length   172 a.a.
NCBI ID   WP_003219228.1    Uniprot ID   A0A063XE16
Organism   Bacillus subtilis strain SRCM103689     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4074332..4084850
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ES965_RS21200 (ES965_21200) yyaJ 4074834..4076189 (+) 1356 WP_129092845.1 MFS transporter -
  ES965_RS21205 (ES965_21205) maa 4076223..4076777 (-) 555 WP_032722825.1 sugar O-acetyltransferase -
  ES965_RS21210 (ES965_21210) yyaH 4076795..4077175 (-) 381 WP_129092846.1 VOC family protein -
  ES965_RS21215 (ES965_21215) ccpB 4077231..4078166 (-) 936 WP_129092847.1 transcriptional regulator CcpB -
  ES965_RS21220 (ES965_21220) xth 4078226..4078984 (-) 759 WP_003226843.1 exodeoxyribonuclease III -
  ES965_RS21225 (ES965_21225) rpsR 4079049..4079288 (-) 240 WP_003219224.1 30S ribosomal protein S18 -
  ES965_RS21230 (ES965_21230) ssbA 4079332..4079850 (-) 519 WP_003219228.1 single-stranded DNA-binding protein SsbA Machinery gene
  ES965_RS21235 (ES965_21235) rpsF 4079891..4080178 (-) 288 WP_024571351.1 30S ribosomal protein S6 -
  ES965_RS21240 (ES965_21240) ychF 4080289..4081389 (-) 1101 WP_003242727.1 redox-regulated ATPase YchF -
  ES965_RS21245 (ES965_21245) yyaE 4081516..4083519 (-) 2004 WP_129092848.1 molybdopterin-dependent oxidoreductase -
  ES965_RS21250 (ES965_21250) yyzM 4083570..4083776 (-) 207 WP_003226838.1 DUF951 family protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18742.31 Da        Isoelectric Point: 4.7621

>NTDB_id=339662 ES965_RS21230 WP_003219228.1 4079332..4079850(-) (ssbA) [Bacillus subtilis strain SRCM103689]
MLNRVVLVGRLTKDPELRYTPNGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKNGGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=339662 ES965_RS21230 WP_003219228.1 4079332..4079850(-) (ssbA) [Bacillus subtilis strain SRCM103689]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAACGGTGCGGCTGTTGC
TACGTTTACTCTTGCTGTGAATCGTACATTTACGAACCAGTCCGGAGAACGTGAGGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTCTTGAAAAAAGGAAGCCTTGCAGGCGTAGATGGCCGTTTACAAACAAGA
AACTATGAAAACCAGCAAGGACAGCGTGTCTTCGTGACAGAGGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCGAAAAA
CGGCGGCGGTTCTGGTTCAGGTGGATACAACGAAGGAAACAGCGGCGGAGGCCAGTACTTTGGCGGAGGCCAAAACGATA
ATCCATTTGGGGGAAATCAAAACAACCAGAGACGCAATCAGGGGAACAGCTTTAATGATGACCCATTTGCCAACGACGGC
AAACCGATTGACATCTCGGATGATGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A063XE16

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

100

100

1
  ssb Latilactobacillus sakei subsp. sakei 23K

58.192

100

0.599
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.628

0.395
  ssb Glaesserella parasuis strain SC1401

35.519

100

0.378

Multiple sequence alignment