Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   ES963_RS21960 Genome accession   NZ_CP035390
Coordinates   4093293..4093811 (-) Length   172 a.a.
NCBI ID   WP_003219228.1    Uniprot ID   A0A063XE16
Organism   Bacillus subtilis strain SRCM103641     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4088293..4098811
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ES963_RS21930 (ES963_21930) yyaJ 4088797..4090152 (+) 1356 WP_014481501.1 MFS transporter -
  ES963_RS21935 (ES963_21935) maa 4090186..4090740 (-) 555 WP_046161083.1 sugar O-acetyltransferase -
  ES963_RS21940 (ES963_21940) yyaH 4090758..4091138 (-) 381 WP_003244460.1 VOC family protein -
  ES963_RS21945 (ES963_21945) ccpB 4091194..4092129 (-) 936 WP_046161084.1 transcriptional regulator CcpB -
  ES963_RS21950 (ES963_21950) xth 4092188..4092946 (-) 759 WP_015250782.1 exodeoxyribonuclease III -
  ES963_RS21955 (ES963_21955) rpsR 4093010..4093249 (-) 240 WP_003219224.1 30S ribosomal protein S18 -
  ES963_RS21960 (ES963_21960) ssbA 4093293..4093811 (-) 519 WP_003219228.1 single-stranded DNA-binding protein SsbA Machinery gene
  ES963_RS21965 (ES963_21965) rpsF 4093852..4094139 (-) 288 WP_003244064.1 30S ribosomal protein S6 -
  ES963_RS21970 (ES963_21970) ychF 4094250..4095350 (-) 1101 WP_003242727.1 redox-regulated ATPase YchF -
  ES963_RS21975 (ES963_21975) yyaE 4095477..4097480 (-) 2004 WP_129093182.1 molybdopterin-dependent oxidoreductase -
  ES963_RS21980 (ES963_21980) yyzM 4097531..4097737 (-) 207 WP_003226838.1 DUF951 family protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18742.31 Da        Isoelectric Point: 4.7621

>NTDB_id=339580 ES963_RS21960 WP_003219228.1 4093293..4093811(-) (ssbA) [Bacillus subtilis strain SRCM103641]
MLNRVVLVGRLTKDPELRYTPNGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKNGGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=339580 ES963_RS21960 WP_003219228.1 4093293..4093811(-) (ssbA) [Bacillus subtilis strain SRCM103641]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAACGGTGCGGCTGTTGC
TACGTTTACTCTTGCTGTGAATCGTACATTTACGAACCAGTCCGGAGAACGTGAGGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTCTTGAAAAAAGGAAGCCTTGCAGGCGTAGATGGCCGTTTACAAACAAGA
AACTATGAAAACCAGCAAGGACAGCGTGTCTTCGTGACAGAGGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCGAAAAA
CGGCGGCGGTTCTGGTTCAGGTGGATACAACGAAGGAAACAGCGGCGGAGGCCAGTACTTTGGCGGAGGCCAAAATGATA
ATCCATTTGGGGGAAATCAAAACAACCAGAGACGCAATCAGGGGAACAGCTTTAATGATGACCCATTTGCCAACGACGGC
AAACCGATTGACATCTCGGATGATGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A063XE16

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

100

100

1
  ssb Latilactobacillus sakei subsp. sakei 23K

58.192

100

0.599
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.628

0.395
  ssb Glaesserella parasuis strain SC1401

35.519

100

0.378

Multiple sequence alignment