Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   ES963_RS12895 Genome accession   NZ_CP035390
Coordinates   2391547..2391843 (-) Length   98 a.a.
NCBI ID   WP_003230162.1    Uniprot ID   A0A809FGR8
Organism   Bacillus subtilis strain SRCM103641     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2386547..2396843
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ES963_RS12850 (ES963_12850) tasA 2386955..2387740 (-) 786 WP_014480250.1 biofilm matrix protein TasA -
  ES963_RS12855 (ES963_12855) sipW 2387804..2388376 (-) 573 WP_003230181.1 signal peptidase I SipW -
  ES963_RS12860 (ES963_12860) tapA 2388360..2389121 (-) 762 WP_087614619.1 amyloid fiber anchoring/assembly protein TapA -
  ES963_RS12865 (ES963_12865) yqzG 2389393..2389719 (+) 327 WP_029317915.1 YqzG/YhdC family protein -
  ES963_RS12870 (ES963_12870) spoIITA 2389761..2389940 (-) 180 WP_014480252.1 YqzE family protein -
  ES963_RS12875 (ES963_12875) comGG 2390011..2390385 (-) 375 WP_015714252.1 ComG operon protein ComGG Machinery gene
  ES963_RS12880 (ES963_12880) comGF 2390386..2390769 (-) 384 WP_076458111.1 ComG operon protein ComGF Machinery gene
  ES963_RS12885 (ES963_12885) comGE 2390795..2391142 (-) 348 WP_087614620.1 ComG operon protein 5 Machinery gene
  ES963_RS12890 (ES963_12890) comGD 2391126..2391557 (-) 432 WP_080529538.1 comG operon protein ComGD Machinery gene
  ES963_RS12895 (ES963_12895) comGC 2391547..2391843 (-) 297 WP_003230162.1 comG operon protein ComGC Machinery gene
  ES963_RS12900 (ES963_12900) comGB 2391857..2392894 (-) 1038 WP_029317912.1 comG operon protein ComGB Machinery gene
  ES963_RS12905 (ES963_12905) comGA 2392881..2393951 (-) 1071 WP_004399124.1 competence protein ComGA Machinery gene
  ES963_RS12910 (ES963_12910) - 2394163..2394360 (-) 198 WP_014480259.1 CBS domain-containing protein -
  ES963_RS12915 (ES963_12915) corA 2394362..2395315 (-) 954 WP_014480260.1 magnesium transporter CorA -
  ES963_RS12920 (ES963_12920) yqhB 2395457..2396785 (+) 1329 WP_014480261.1 hemolysin family protein -

Sequence

Protein


Download         Length: 98 a.a.        Molecular weight: 10849.74 Da        Isoelectric Point: 6.7083

>NTDB_id=339547 ES963_RS12895 WP_003230162.1 2391547..2391843(-) (comGC) [Bacillus subtilis strain SRCM103641]
MNEKGFTLVEMLIVLFIISILLLITIPNVTKHNQTIQKKGCEGLQNMVKAQMTAFELDHEGQTPSLADLQSEGYVKKDAV
CPNGKRIIITGGEVKVEH

Nucleotide


Download         Length: 297 bp        

>NTDB_id=339547 ES963_RS12895 WP_003230162.1 2391547..2391843(-) (comGC) [Bacillus subtilis strain SRCM103641]
ATGAATGAGAAAGGATTTACACTTGTTGAAATGTTAATCGTGCTCTTTATTATTTCGATCTTGCTTTTAATTACGATACC
GAACGTCACGAAACATAACCAAACCATTCAAAAAAAGGGCTGTGAAGGCTTACAAAACATGGTTAAGGCACAAATGACTG
CATTTGAGCTTGATCATGAAGGACAAACTCCGAGCCTTGCCGATTTACAGTCAGAGGGCTATGTGAAAAAGGATGCTGTC
TGTCCAAATGGTAAGCGCATTATCATCACCGGCGGAGAAGTTAAGGTTGAACATTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A809FGR8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Bacillus subtilis subsp. subtilis str. 168

100

100

1
  comGC Staphylococcus aureus MW2

41.304

93.878

0.388
  comGC Staphylococcus aureus N315

41.304

93.878

0.388
  comYC Streptococcus suis isolate S10

49.333

76.531

0.378

Multiple sequence alignment