Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGE   Type   Machinery gene
Locus tag   ES963_RS12885 Genome accession   NZ_CP035390
Coordinates   2390795..2391142 (-) Length   115 a.a.
NCBI ID   WP_087614620.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM103641     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2385795..2396142
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ES963_RS12840 (ES963_12840) sinI 2386320..2386493 (+) 174 WP_003230187.1 anti-repressor SinI Regulator
  ES963_RS12845 (ES963_12845) sinR 2386527..2386862 (+) 336 WP_003226345.1 transcriptional regulator SinR Regulator
  ES963_RS12850 (ES963_12850) tasA 2386955..2387740 (-) 786 WP_014480250.1 biofilm matrix protein TasA -
  ES963_RS12855 (ES963_12855) sipW 2387804..2388376 (-) 573 WP_003230181.1 signal peptidase I SipW -
  ES963_RS12860 (ES963_12860) tapA 2388360..2389121 (-) 762 WP_087614619.1 amyloid fiber anchoring/assembly protein TapA -
  ES963_RS12865 (ES963_12865) yqzG 2389393..2389719 (+) 327 WP_029317915.1 YqzG/YhdC family protein -
  ES963_RS12870 (ES963_12870) spoIITA 2389761..2389940 (-) 180 WP_014480252.1 YqzE family protein -
  ES963_RS12875 (ES963_12875) comGG 2390011..2390385 (-) 375 WP_015714252.1 ComG operon protein ComGG Machinery gene
  ES963_RS12880 (ES963_12880) comGF 2390386..2390769 (-) 384 WP_076458111.1 ComG operon protein ComGF Machinery gene
  ES963_RS12885 (ES963_12885) comGE 2390795..2391142 (-) 348 WP_087614620.1 ComG operon protein 5 Machinery gene
  ES963_RS12890 (ES963_12890) comGD 2391126..2391557 (-) 432 WP_080529538.1 comG operon protein ComGD Machinery gene
  ES963_RS12895 (ES963_12895) comGC 2391547..2391843 (-) 297 WP_003230162.1 comG operon protein ComGC Machinery gene
  ES963_RS12900 (ES963_12900) comGB 2391857..2392894 (-) 1038 WP_029317912.1 comG operon protein ComGB Machinery gene
  ES963_RS12905 (ES963_12905) comGA 2392881..2393951 (-) 1071 WP_004399124.1 competence protein ComGA Machinery gene
  ES963_RS12910 (ES963_12910) - 2394163..2394360 (-) 198 WP_014480259.1 CBS domain-containing protein -
  ES963_RS12915 (ES963_12915) corA 2394362..2395315 (-) 954 WP_014480260.1 magnesium transporter CorA -

Sequence

Protein


Download         Length: 115 a.a.        Molecular weight: 13295.33 Da        Isoelectric Point: 5.1901

>NTDB_id=339545 ES963_RS12885 WP_087614620.1 2390795..2391142(-) (comGE) [Bacillus subtilis strain SRCM103641]
MWRENKGFSTIETMSALSLWLFVLLTVVPLWDKLMSDEKIAESREIGYQMMNESISKYVMSGEGAASKTITKNNHIYAMK
WEEEGEYQNVCIKAAAYKEKSFCLSILQTEWLHPS

Nucleotide


Download         Length: 348 bp        

>NTDB_id=339545 ES963_RS12885 WP_087614620.1 2390795..2391142(-) (comGE) [Bacillus subtilis strain SRCM103641]
ATGTGGAGAGAAAATAAAGGTTTTTCTACAATAGAAACAATGTCTGCGCTAAGCCTGTGGCTGTTTGTGCTGCTGACAGT
CGTCCCCTTGTGGGACAAGCTGATGTCTGATGAAAAAATAGCGGAATCACGAGAAATTGGCTATCAGATGATGAATGAGA
GCATTAGCAAATATGTCATGAGTGGTGAAGGAGCCGCGTCAAAAACGATTACAAAGAACAATCATATCTATGCAATGAAG
TGGGAGGAGGAGGGCGAATATCAAAACGTATGTATCAAAGCCGCAGCTTATAAAGAAAAATCATTTTGCCTCAGCATTTT
GCAGACAGAATGGCTACACCCTTCTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGE Bacillus subtilis subsp. subtilis str. 168

97.391

100

0.974

Multiple sequence alignment