Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   ERL55_RS03595 Genome accession   NZ_CP035376
Coordinates   792722..793780 (+) Length   352 a.a.
NCBI ID   WP_129135209.1    Uniprot ID   -
Organism   Luteimonas sp. YGD11-2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 787722..798780
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ERL55_RS03580 - 788653..789264 (+) 612 WP_129135206.1 hypothetical protein -
  ERL55_RS03585 - 789237..789893 (-) 657 WP_129135207.1 hypothetical protein -
  ERL55_RS03590 - 789963..792467 (-) 2505 WP_129135208.1 penicillin-binding protein 1A -
  ERL55_RS03595 pilM 792722..793780 (+) 1059 WP_129135209.1 pilus assembly protein PilM Machinery gene
  ERL55_RS03600 - 793780..794421 (+) 642 WP_129135210.1 PilN domain-containing protein -
  ERL55_RS03605 pilO 794436..795086 (+) 651 WP_129137186.1 type 4a pilus biogenesis protein PilO -
  ERL55_RS03610 - 795086..795628 (+) 543 WP_164972110.1 pilus assembly protein PilP -
  ERL55_RS03615 pilQ 795642..797648 (+) 2007 WP_129135211.1 type IV pilus secretin PilQ -
  ERL55_RS03620 - 797777..798772 (+) 996 WP_129135212.1 MoxR family ATPase -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37587.04 Da        Isoelectric Point: 4.4558

>NTDB_id=339414 ERL55_RS03595 WP_129135209.1 792722..793780(+) (pilM) [Luteimonas sp. YGD11-2]
MGLITKNQSPLVGVDISSTAVKLLQLSRSGERYRVEHYAVEPLPPNAVVEKNIVEVEAVGDAIRRAMSRSGSKAKHAAAA
VAGSAVITKTIPMPAELDEDEMESAVELEAINYIPYPIDEVNLDFEVLGPVPGNPEMVNVLLAASRSENVEMRASALELG
GLTAKVMDVEAFAIENAYALLAGGLNAAHDGIVALVDVGATMTTLNILRGGRSLYTREQVFGGKQLTDEVMRRYGLSYEE
AGLAKRQGGLPESYEIEVLEPFKEALVQQISRLLQFFYAGSEFNRVDHVVLAGGCASIGGVPEMVEEQLGVQTVVANPLA
QMTLGPRVQAHALAQDAPALMIACGLALRSFD

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=339414 ERL55_RS03595 WP_129135209.1 792722..793780(+) (pilM) [Luteimonas sp. YGD11-2]
GTGGGGCTCATCACAAAAAATCAGTCGCCACTCGTGGGCGTCGATATCAGTTCGACTGCGGTCAAGCTGCTGCAGCTGTC
GCGCTCGGGAGAGCGCTACCGGGTCGAGCACTATGCGGTCGAGCCATTGCCGCCCAACGCGGTGGTGGAGAAGAACATCG
TCGAGGTCGAGGCGGTGGGCGATGCCATCCGCCGCGCGATGTCGCGCTCGGGTTCGAAGGCGAAGCATGCCGCGGCGGCC
GTGGCCGGTTCGGCGGTGATCACCAAGACGATCCCGATGCCCGCCGAGCTCGACGAGGACGAGATGGAATCGGCCGTCGA
GCTGGAGGCCATCAACTACATCCCGTACCCCATCGACGAAGTGAACCTCGACTTCGAGGTGCTCGGGCCGGTGCCCGGCA
ATCCCGAGATGGTCAACGTGCTGCTGGCGGCCTCGCGTTCGGAGAACGTGGAGATGCGTGCCTCGGCGCTGGAGCTGGGC
GGCCTCACCGCCAAGGTGATGGACGTCGAGGCATTCGCGATCGAGAACGCCTACGCGCTGCTGGCGGGAGGCCTCAACGC
CGCGCACGACGGCATCGTCGCGCTGGTCGATGTCGGCGCGACGATGACCACCCTCAACATCCTGCGCGGCGGGCGCAGCC
TCTACACCCGCGAGCAGGTCTTCGGTGGCAAGCAGCTCACCGACGAGGTGATGCGCCGTTACGGCCTCAGCTACGAGGAA
GCGGGCCTGGCCAAGCGCCAGGGCGGCCTGCCCGAGAGCTACGAGATCGAGGTGCTGGAACCCTTCAAGGAAGCGCTGGT
GCAGCAGATCAGCCGCCTGCTGCAGTTCTTCTATGCCGGCAGCGAGTTCAACCGCGTCGACCACGTGGTGCTGGCCGGCG
GCTGCGCGTCGATCGGCGGGGTGCCGGAGATGGTCGAGGAGCAGCTGGGCGTGCAGACCGTTGTCGCCAACCCGCTGGCG
CAGATGACGCTGGGTCCGCGCGTGCAGGCGCATGCGCTGGCCCAGGACGCCCCCGCGCTGATGATCGCCTGTGGCCTGGC
CCTGAGGAGCTTCGACTGA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(13-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Acinetobacter baumannii D1279779

51.705

100

0.517
  comM Acinetobacter nosocomialis M2

51.42

100

0.514
  comM Acinetobacter baylyi ADP1

51.754

97.159

0.503
  pilM Legionella pneumophila strain ERS1305867

45.714

99.432

0.455

Multiple sequence alignment