Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   EKL02_RS17670 Genome accession   NZ_CP035311
Coordinates   3946248..3946730 (-) Length   160 a.a.
NCBI ID   WP_128903254.1    Uniprot ID   A0A410UWX8
Organism   Janthinobacterium sp. 17J80-10     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3941248..3951730
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EKL02_RS17665 (EKL02_17665) - 3945307..3946029 (-) 723 WP_128903253.1 transposase -
  EKL02_RS17670 (EKL02_17670) ssb 3946248..3946730 (-) 483 WP_128903254.1 single-stranded DNA-binding protein Machinery gene
  EKL02_RS17675 (EKL02_17675) - 3946743..3947933 (-) 1191 WP_128903579.1 MFS transporter -
  EKL02_RS17680 (EKL02_17680) uvrA 3948104..3950956 (+) 2853 WP_128903580.1 excinuclease ABC subunit UvrA -
  EKL02_RS17685 (EKL02_17685) - 3950969..3951277 (+) 309 WP_128903255.1 acylphosphatase -

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 17504.47 Da        Isoelectric Point: 5.9567

>NTDB_id=339276 EKL02_RS17670 WP_128903254.1 3946248..3946730(-) (ssb) [Janthinobacterium sp. 17J80-10]
MASVNKAIIVGNLGRDPETRYMPNGDAVTNIAVATTENWKDKNTGEKKELTEWHRITFYRKLAEIAGQYLKKGSQVYIEG
RLQTRKWTDKDGAERYTTEIIADSMQMLGGRQGMGGGNAAPDEEYSQAPARQSSGGAGAASRPASKPAPNFSDMDDDIPF

Nucleotide


Download         Length: 483 bp        

>NTDB_id=339276 EKL02_RS17670 WP_128903254.1 3946248..3946730(-) (ssb) [Janthinobacterium sp. 17J80-10]
ATGGCATCGGTCAACAAAGCTATCATCGTCGGCAACCTCGGACGTGATCCGGAAACCCGTTACATGCCTAATGGCGATGC
GGTCACCAACATTGCCGTCGCCACGACCGAGAACTGGAAAGACAAGAATACCGGCGAGAAAAAGGAACTGACGGAATGGC
ACCGCATTACCTTTTATCGCAAGCTAGCGGAAATCGCCGGCCAGTATTTGAAGAAGGGTTCCCAAGTCTATATTGAAGGC
CGCCTGCAGACGCGCAAGTGGACCGACAAGGATGGCGCCGAGCGCTACACGACGGAAATCATTGCCGACTCCATGCAGAT
GCTTGGCGGTCGTCAGGGCATGGGCGGTGGTAACGCCGCGCCGGATGAAGAGTACAGTCAGGCACCGGCACGGCAAAGTA
GCGGTGGGGCGGGTGCTGCTTCCCGTCCGGCTTCCAAGCCGGCACCGAACTTTTCGGACATGGATGACGATATTCCATTC
TGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A410UWX8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

54.802

100

0.606
  ssb Glaesserella parasuis strain SC1401

52.778

100

0.594
  ssb Neisseria meningitidis MC58

53.977

100

0.594
  ssb Neisseria gonorrhoeae MS11

53.714

100

0.587

Multiple sequence alignment