Detailed information NTG0339068

Bioinformatically predicted

Overview

• Name: ysxA/radC
• Type: Machinery gene
• Locus tag: F1612_RS06095
• Genome accession: NZ_CP043843
• Coordinates: 1186481..1187167 (+)
• Length: 228 a.a.
• NCBI ID: WP_000692886.1
• Uniprot ID: -
• Organism: Staphylococcus aureus strain NCCP 16830
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1181481..1192167

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
F1612_RS06080 (F1612_06215)	-	1181599..1184229 (+)	2631	WP_158172976.1	valine--tRNA ligase	-
F1612_RS06085 (F1612_06220)	-	1184242..1185513 (+)	1272	WP_001108346.1	bifunctional folylpolyglutamate synthase/dihydrofolate synthase	-
F1612_RS06090 (F1612_06225)	-	1185777..1186484 (+)	708	WP_000261115.1	prepilin peptidase	-
F1612_RS06095 (F1612_06230)	ysxA/radC	1186481..1187167 (+)	687	WP_000692886.1	RadC family protein	Machinery gene
F1612_RS06100 (F1612_06235)	-	1187235..1187519 (+)	285	WP_000171859.1	hypothetical protein	-
F1612_RS06105 (F1612_06240)	-	1187636..1187832 (-)	197	Protein_1165	hypothetical protein	-
F1612_RS06110 (F1612_06245)	-	1187992..1188465 (+)	474	WP_001236734.1	DUF4930 family protein	-
F1612_RS06115 (F1612_06250)	-	1188539..1188658 (+)	120	WP_000840602.1	hypothetical protein	-
F1612_RS06120 (F1612_06255)	mreC	1188857..1189698 (+)	842	Protein_1168	rod shape-determining protein MreC	-
F1612_RS06125 (F1612_06260)	mreD	1189698..1190228 (+)	531	WP_001259925.1	rod shape-determining protein MreD	-
F1612_RS06130 (F1612_06265)	rplU	1190590..1190898 (+)	309	WP_000457386.1	50S ribosomal protein L21	-
F1612_RS06135 (F1612_06270)	-	1190904..1191224 (+)	321	WP_000633692.1	ribosomal-processing cysteine protease Prp	-
F1612_RS06140 (F1612_06275)	rpmA	1191236..1191520 (+)	285	WP_000916187.1	50S ribosomal protein L27	-

Sequence

Protein

• Length: 228 a.a.
• Molecular weight: 25311.24 Da
• Isoelectric Point: 6.7572

>NTDB_id=339068 F1612_RS06095 WP_000692886.1 1186481..1187167(+) (ysxA/radC) [Staphylococcus aureus strain NCCP 16830]
MKIKEMVTSEMPRERLLSHGAKSLSNTELLAILINTGRKGFSSIDISNELLKSASNLNELKKSSINDLIQVKGIGLQKAI
TLKAAFELGERMGRRAENNRIKITQPSDVADYMIPTMKDLTQEHFVILLLNSKNVVIKETCVFKGTLNSSIVHPREIFSI
AVRENANAIIAVHNHPSGDVTPSQEDIITTMRLKECGLILGIDLLDHIIIGDNRFTSLVEAGYFDEND

Nucleotide

• Length: 687 bp

>NTDB_id=339068 F1612_RS06095 WP_000692886.1 1186481..1187167(+) (ysxA/radC) [Staphylococcus aureus strain NCCP 16830]
TTGAAAATTAAAGAAATGGTAACTTCAGAAATGCCAAGAGAACGTTTGTTAAGCCATGGTGCAAAAAGTCTTTCGAATAC
AGAATTATTAGCTATATTAATTAACACCGGAAGAAAAGGATTCTCGAGCATAGACATTAGTAATGAACTGCTTAAATCTG
CTTCGAATCTGAATGAATTGAAAAAATCTTCAATTAACGATTTGATACAAGTTAAAGGGATTGGATTACAAAAAGCAATT
ACTTTAAAAGCAGCATTTGAGTTAGGGGAAAGAATGGGGAGAAGAGCTGAAAATAATCGTATAAAAATAACGCAACCAAG
TGATGTTGCTGATTATATGATTCCAACAATGAAAGATTTAACACAAGAACATTTTGTCATTTTATTGTTAAATTCAAAAA
ATGTAGTGATTAAAGAAACCTGTGTTTTTAAAGGTACATTAAATAGTTCGATTGTACATCCACGTGAAATTTTTAGTATT
GCGGTGAGAGAAAATGCCAATGCAATCATCGCAGTTCATAATCATCCATCCGGTGATGTAACGCCCTCACAAGAAGATAT
CATAACAACAATGAGGTTGAAGGAGTGTGGTTTGATTTTAGGGATAGATTTATTGGATCATATTATAATCGGTGATAATA
GATTTACCAGTCTTGTAGAAGCGGGTTACTTTGATGAAAATGATTGA

Domains

Predicted by InterProScan.

• RadC-like JAB domain (RadC) (103-222)

• UPF0758 N-terminal (UPF0758_N) (3-80)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ysxA/radC	Bacillus subtilis subsp. subtilis str. 168	52.679	98.246	0.518
radC	Streptococcus pneumoniae TIGR4	41.038	92.982	0.382
radC	Streptococcus gordonii str. Challis substr. CH1	39.908	95.614	0.382
radC	Streptococcus pneumoniae R6	40.566	92.982	0.377
radC	Streptococcus pneumoniae D39	40.566	92.982	0.377