Detailed information    

insolico Bioinformatically predicted

Overview

Name   ciaR   Type   Regulator
Locus tag   F1745_RS17220 Genome accession   NZ_CP043825
Coordinates   3448493..3449152 (+) Length   219 a.a.
NCBI ID   WP_001221502.1    Uniprot ID   B7LGG8
Organism   Escherichia coli strain RM8082     
Function   repress competence development; post-transcriptional repression of CSP production (predicted from homology)   
Competence regulation

Genomic Context

Location: 3443493..3454152
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F1745_RS17200 (F1745_17310) plsC 3443641..3444378 (-) 738 WP_000965712.1 1-acylglycerol-3-phosphate O-acyltransferase -
  F1745_RS17205 (F1745_17315) parC 3444611..3446869 (-) 2259 WP_001281881.1 DNA topoisomerase IV subunit A -
  F1745_RS17210 (F1745_17320) ygiV 3447414..3447896 (-) 483 WP_000183494.1 AraC family transcriptional regulator -
  F1745_RS17215 (F1745_17325) ygiW 3447949..3448341 (-) 393 WP_000712658.1 OB fold stress tolerance protein YgiW -
  F1745_RS17220 (F1745_17330) ciaR 3448493..3449152 (+) 660 WP_001221502.1 quorum sensing response regulator transcription factor QseB Regulator
  F1745_RS17225 (F1745_17335) qseC 3449149..3450497 (+) 1349 Protein_3385 quorum sensing histidine kinase QseC -
  F1745_RS17230 (F1745_17340) ygiZ 3450543..3450875 (-) 333 WP_000912120.1 DUF2645 family protein -
  F1745_RS17235 (F1745_17345) mdaB 3451194..3451775 (+) 582 WP_000065440.1 NADPH:quinone oxidoreductase MdaB -
  F1745_RS17240 (F1745_17350) ygiN 3451806..3452120 (+) 315 WP_000958598.1 putative quinol monooxygenase -
  F1745_RS17245 (F1745_17355) - 3452164..3453495 (-) 1332 WP_000778880.1 MFS transporter -

Sequence

Protein


Download         Length: 219 a.a.        Molecular weight: 24745.66 Da        Isoelectric Point: 6.6543

>NTDB_id=339005 F1745_RS17220 WP_001221502.1 3448493..3449152(+) (ciaR) [Escherichia coli strain RM8082]
MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRDILREWREKGQREPVLILTA
RDALEERVEGLRLGADDYLCKPFALIEVAARLEALMRRTNGQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLEL
LMRNAGRVLPRKLIEEKLYTWDEEVTSNAVEVHVHHLRRKLGSDFIRTVHGIGYTLGEK

Nucleotide


Download         Length: 660 bp        

>NTDB_id=339005 F1745_RS17220 WP_001221502.1 3448493..3449152(+) (ciaR) [Escherichia coli strain RM8082]
ATGCGAATTTTACTGATAGAAGATGACATGCTGATTGGCGACGGCATCAAAACGGGCCTTAGTAAAATGGGTTTTAGCGT
CGACTGGTTTACACAAGGTCGTCAGGGAAAAGAGGCGCTTTATAGCGCGCCTTATGATGCGGTGATCCTGGATTTAACCT
TACCAGGCATGGATGGTCGCGATATTTTGCGCGAATGGCGAGAAAAAGGTCAGCGTGAGCCGGTACTGATCCTGACCGCG
CGCGATGCGCTGGAGGAACGTGTAGAAGGGCTGCGTCTGGGAGCTGACGATTATCTGTGTAAACCTTTTGCGTTGATAGA
AGTCGCCGCCAGGCTGGAAGCTCTGATGCGCCGAACCAACGGCCAGGCCAGCAACGAGCTGCGCCACGGTAACGTCATGC
TCGACCCCGGCAAACGTATCGCCACGCTGGCTGGCGAACCCTTAACACTGAAACCAAAAGAATTTGCCCTGCTGGAATTA
CTGATGCGTAACGCTGGTCGGGTACTGCCGCGCAAACTGATTGAAGAGAAACTGTATACCTGGGACGAAGAGGTCACCAG
TAATGCCGTTGAAGTGCATGTGCATCATCTGCGACGCAAACTCGGTAGTGATTTTATTCGTACCGTGCATGGTATTGGCT
ACACATTAGGTGAGAAATGA

Domains

Predicted by InterProScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(145-216)

Response regulator receiver domain (Response_reg)

(3-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B7LGG8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ciaR Streptococcus pneumoniae Rx1

38.326

100

0.397
  ciaR Streptococcus pneumoniae D39

38.326

100

0.397
  ciaR Streptococcus pneumoniae R6

38.326

100

0.397
  ciaR Streptococcus pneumoniae TIGR4

38.326

100

0.397
  ciaR Streptococcus mutans UA159

35.874

100

0.365

Multiple sequence alignment