Detailed information    

insolico Bioinformatically predicted

Overview

Name   scnR   Type   Regulator
Locus tag   EQM14_RS11445 Genome accession   NZ_CP035283
Coordinates   2369142..2369843 (-) Length   233 a.a.
NCBI ID   WP_128743162.1    Uniprot ID   -
Organism   Caproiciproducens sp. NJN-50     
Function   regulate comX expression (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 2364432..2383399 2369142..2369843 within 0


Gene organization within MGE regions


Location: 2364432..2383399
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQM14_RS11420 (EQM14_11420) - 2364450..2365178 (+) 729 WP_164919055.1 LytTR family DNA-binding domain-containing protein -
  EQM14_RS11425 (EQM14_11425) - 2365570..2366481 (+) 912 WP_164919056.1 sensor histidine kinase -
  EQM14_RS11430 (EQM14_11430) - 2366609..2366773 (+) 165 WP_243112516.1 cyclic lactone autoinducer peptide -
  EQM14_RS11440 (EQM14_11440) - 2367715..2369133 (-) 1419 WP_164919057.1 HAMP domain-containing sensor histidine kinase -
  EQM14_RS11445 (EQM14_11445) scnR 2369142..2369843 (-) 702 WP_128743162.1 response regulator transcription factor Regulator
  EQM14_RS11450 (EQM14_11450) - 2370001..2370762 (+) 762 WP_128743163.1 ABC transporter ATP-binding protein -
  EQM14_RS11455 (EQM14_11455) - 2370755..2371495 (+) 741 WP_128743164.1 ABC transporter permease -
  EQM14_RS11460 (EQM14_11460) - 2371492..2372250 (+) 759 WP_128743165.1 ABC transporter permease -
  EQM14_RS11465 (EQM14_11465) - 2372893..2374218 (-) 1326 WP_128743166.1 class II D-tagatose-bisphosphate aldolase, non-catalytic subunit -
  EQM14_RS11470 (EQM14_11470) - 2374380..2375228 (-) 849 WP_128743167.1 class II fructose-bisphosphate aldolase -
  EQM14_RS11480 (EQM14_11480) - 2375566..2376549 (-) 984 WP_164919059.1 alcohol dehydrogenase catalytic domain-containing protein -
  EQM14_RS11485 (EQM14_11485) - 2376700..2377755 (-) 1056 WP_128743170.1 sugar ABC transporter substrate-binding protein -
  EQM14_RS11490 (EQM14_11490) - 2377831..2378304 (-) 474 WP_128743171.1 ABC transporter permease -
  EQM14_RS11495 (EQM14_11495) - 2378271..2378687 (-) 417 WP_128743172.1 ribbon-helix-helix domain-containing protein -
  EQM14_RS11500 (EQM14_11500) - 2378671..2379114 (-) 444 WP_128743173.1 hypothetical protein -
  EQM14_RS11505 (EQM14_11505) - 2379674..2380498 (+) 825 WP_128743174.1 hypothetical protein -
  EQM14_RS11510 (EQM14_11510) - 2380687..2381433 (-) 747 WP_128743175.1 metallophosphoesterase family protein -
  EQM14_RS16395 - 2381558..2381731 (-) 174 WP_164919060.1 hypothetical protein -
  EQM14_RS11515 (EQM14_11515) - 2381824..2382036 (+) 213 WP_128743176.1 helix-turn-helix transcriptional regulator -
  EQM14_RS11520 (EQM14_11520) - 2382287..2383399 (-) 1113 WP_128743177.1 alanine dehydrogenase -

Sequence

Protein


Download         Length: 233 a.a.        Molecular weight: 25903.02 Da        Isoelectric Point: 6.5011

>NTDB_id=338920 EQM14_RS11445 WP_128743162.1 2369142..2369843(-) (scnR) [Caproiciproducens sp. NJN-50]
MESNIKNKKLLIVDDEPKLLKLIVSVLEADGYHSIVTASTVASAKSALERERPALAILDVMLPDGDGFHLMQDIRAASDI
PVLFLTARGDAEDRFRGFGLGADDYIIKPFLSKELLFRIYAVLRRTYKENAVELSLEACTVDLEKAEVYKNGTTIPLTAK
EHDILSALFSNAGKIVTIDSILQSVWGDAYYGYENTLMGHIRRIREKIESDPSKPVSLITVKGLGYKLMLKGR

Nucleotide


Download         Length: 702 bp        

>NTDB_id=338920 EQM14_RS11445 WP_128743162.1 2369142..2369843(-) (scnR) [Caproiciproducens sp. NJN-50]
ATGGAAAGCAACATAAAAAATAAAAAGCTTCTGATCGTCGATGACGAACCGAAGCTTTTAAAATTGATTGTTTCAGTTCT
GGAAGCGGACGGATACCACTCCATCGTGACCGCTTCCACGGTCGCAAGCGCCAAATCGGCCCTGGAGCGGGAGAGGCCGG
CTCTCGCAATTTTGGATGTCATGCTGCCCGACGGGGACGGTTTTCATTTGATGCAGGATATTCGTGCGGCTTCCGATATC
CCCGTCCTGTTTCTCACTGCCCGCGGGGACGCAGAAGATCGCTTTCGTGGGTTCGGTTTAGGTGCCGACGATTATATCAT
TAAGCCGTTTTTATCAAAAGAATTGCTGTTTCGCATCTATGCGGTGCTGCGCCGGACCTACAAAGAAAACGCAGTCGAGC
TGTCACTGGAGGCCTGCACGGTTGATCTTGAAAAAGCCGAGGTTTATAAAAATGGGACTACGATTCCACTGACCGCGAAA
GAACACGATATATTATCCGCCCTTTTTTCAAATGCGGGGAAAATTGTTACAATCGATTCGATCCTTCAATCCGTATGGGG
AGATGCCTATTACGGTTACGAAAATACGTTGATGGGACACATCCGTAGAATCCGAGAGAAAATAGAATCCGATCCTTCAA
AGCCCGTTTCTCTGATCACAGTAAAAGGATTGGGATACAAGCTGATGCTGAAGGGCAGATGA

Domains

Predicted by InterproScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(152-228)

Response regulator receiver domain (Response_reg)

(11-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  scnR Streptococcus mutans UA159

49.778

96.567

0.481
  vicR Streptococcus mutans UA159

38.428

98.283

0.378
  micA Streptococcus pneumoniae Cp1015

36.957

98.712

0.365

Multiple sequence alignment